Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B19
         (1247 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.063
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   9.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.5 bits (73), Expect = 0.063
 Identities = 36/160 (22%), Positives = 38/160 (23%), Gaps = 17/160 (10%)
 Frame = +1

Query: 373 GGGGGGGPXXKXPPPP--GXGGFXXGXPXXXPPXXPXPPGKXGGXXXXPPPXGXNXX--- 537
           G G         PPPP     G     P       P PP         PPP   +     
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSN 387

Query: 538 -PXKKGGXPKKKXXXKXPXXXXXPKKXPXXGFXPRAPP--PXXXPXXXXPXKXGGXPXGX 708
            P      P +      P         P     P  PP  P   P    P    G P   
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447

Query: 709 XKTPGXP---------PXNPPXXPXFPXPXXKXKXGPFXP 801
              P  P         P  PP  P  P P       P  P
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 373 GGGGGGGPXXKXPPPPGXGGF 435
           GGG GG       PPPG GGF
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGF 207



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 25/79 (31%), Positives = 25/79 (31%)
 Frame = -2

Query: 649 GGGPLGXXPXXXPFWGXGPFXXXXXXXFFXGXPPFXGEXGXXXXXXXXXXXXPXFRGGGX 470
           GGG  G  P    F G G F          G   F G  G            P   GGG 
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHH--GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGL 251

Query: 469 XGXGXGXGPPXGXPLXPGG 413
            G G G G   G P   GG
Sbjct: 252 GGFGGGPGGFGGGPGGHGG 270



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 376 GGGGGGPXXKXPPPPGXGGF 435
           GG GGG     P P G GGF
Sbjct: 191 GGFGGGSGGPPPGPGGFGGF 210


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 18/43 (41%), Positives = 18/43 (41%)
 Frame = +1

Query: 388 GGPXXKXPPPPGXGGFXXGXPXXXPPXXPXPPGKXGGXXXXPP 516
           GGP    PPPPG  G   G P   PP  P P    GG     P
Sbjct: 759 GGPPPP-PPPPGVAG--AGPP---PPPPPPPAVSAGGSRYYAP 795



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/42 (38%), Positives = 16/42 (38%)
 Frame = +1

Query: 394 PXXKXPPPPGXGGFXXGXPXXXPPXXPXPPGKXGGXXXXPPP 519
           P    PP P  GG         PP  P PPG  G     PPP
Sbjct: 748 PIPVPPPAPIMGG---------PPPPPPPPGVAGAGPPPPPP 780



 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +1

Query: 403 KXPPPPGXGGFXXGXPXXXPPXXPXPPGKXGGXXXXPPPXG 525
           K PPPP         P   P   P P    GG    PPP G
Sbjct: 730 KSPPPPPPAVIVP-TPAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = -3

Query: 453 GXXPXXEXPXXRGGGXFXXXPPPPPPP 373
           G  P    P   G G     PPPPPPP
Sbjct: 760 GPPPPPPPPGVAGAGP---PPPPPPPP 783


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 22/90 (24%), Positives = 23/90 (25%), Gaps = 1/90 (1%)
 Frame = +3

Query: 411  PPPGXRGXPXGGPXPXPXXXXXXXXXXXXXXGXPPPXGGKPXSPXKGGXPXKKXXXXXXX 590
            P P   G P   P P P                P P    P  P   G P          
Sbjct: 1113 PVPAPSGAP---PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP 1169

Query: 591  XGPXPQKGXXXGXXP-KGPPPXXXPXKXGP 677
              P P  G      P  G PP   P +  P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.154    0.540 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,521
Number of Sequences: 5004
Number of extensions: 32428
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 679334062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)