Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B18
         (1224 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...   269   6e-73
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...   224   2e-59
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    31   0.33 
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    27   4.0  
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    27   5.3  

>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score =  269 bits (659), Expect = 6e-73
 Identities = 129/229 (56%), Positives = 174/229 (75%), Gaps = 1/229 (0%)
 Frame = +3

Query: 150 AVLFXRFAGVKQLVVGAGTHFFIPWVQRPIXFXIRSRPSNVPXXTGSKALQNVNITLRIL 329
           AVLF R +GV++ VV  GTHF IPW+Q+ I + +R+RP N+   TGSK LQ V++TLR+L
Sbjct: 35  AVLFDRLSGVQKQVVQEGTHFLIPWLQKAIVYDVRTRPRNIATTTGSKDLQMVSLTLRVL 94

Query: 330 FSPVPDQLPSIYTXLGIDYXEXVLPSITSEVLKAVVAQFDAGXLITQRXXVSQKVNDSLT 509
             P    LP IY  LG+DY E VLPSI +E+LK+VVAQFDA  LITQR  VS K+   L 
Sbjct: 95  HRPEVGMLPQIYQNLGLDYDERVLPSIGNEILKSVVAQFDAAELITQREVVSAKIRQELV 154

Query: 510 ERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAE 689
           +RA +FG+ L+D+SITH+TFGKEFT+AVE KQ+AQQEAE+ARFLVE++EQ+++A VI AE
Sbjct: 155 QRATEFGIRLEDVSITHMTFGKEFTKAVERKQIAQQEAERARFLVEQSEQERQANVIRAE 214

Query: 690 GDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLA-KSRNVTYLPHG 833
           G+A+AA +++K+   AG  L+++RR+E ++++A  LA K   VTYLP G
Sbjct: 215 GEAEAADIVSKALDKAGGALIQIRRLETSKEVATALANKGAQVTYLPFG 263


>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score =  224 bits (548), Expect = 2e-59
 Identities = 107/227 (47%), Positives = 155/227 (68%)
 Frame = +3

Query: 144 HSAVLFXRFAGVKQLVVGAGTHFFIPWVQRPIXFXIRSRPSNVPXXTGSKALQNVNITLR 323
           H A+ + R  G+K L+   GTHF IPW++  I + +R++P N+   TG+K LQ VNI  R
Sbjct: 43  HRAIKYSRIGGIKNLIYPEGTHFLIPWIETAIDYDVRAKPRNISSLTGTKDLQMVNINCR 102

Query: 324 ILFSPVPDQLPSIYTXLGIDYXEXVLPSITSEVLKAVVAQFDAGXLITQRXXVSQKVNDS 503
           +L  P    LP IY  LG DY E VLPSI +EVLK+VVAQF+A  LITQR  VS+ V ++
Sbjct: 103 VLSRPDVHALPKIYRTLGGDYDERVLPSIVNEVLKSVVAQFNASQLITQRERVSRLVREN 162

Query: 504 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQKKAAVIA 683
           L +RAA+F ++LDD+S+TH+ F  EFT AVE KQ+AQQ+A++A F V++A  +K+  ++ 
Sbjct: 163 LMKRAARFNILLDDVSLTHVQFSPEFTAAVEAKQIAQQDAQRATFYVDRARMEKQGFIVR 222

Query: 684 AEGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLAKSRNVTYL 824
           A+G+ +AA L+ ++  +   G +ELR++E A +IA  L+KS N   L
Sbjct: 223 AQGEGRAAQLIGEAIKNK-PGFIELRKLETAREIANILSKSNNKVML 268


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 31.1 bits (67), Expect = 0.33
 Identities = 33/180 (18%), Positives = 80/180 (44%), Gaps = 2/180 (1%)
 Frame = +3

Query: 189 VVGAGTHFFIPWVQR-PIXFXIRSRPSNVPXXTGSKALQNVNITLR-ILFSPVPDQLPSI 362
           ++  G  F  P + +      ++ R   +P  +    L NV++ L  +L+  V D   + 
Sbjct: 73  ILTPGVAFLAPIIDKIAYIHSLKERALEIPTQSAI-TLDNVSLGLDGVLYIQVYDPYKAS 131

Query: 363 YTXLGIDYXEXVLPSITSEVLKAVVAQFDAGXLITQRXXVSQKVNDSLTERAAQFGLILD 542
           Y   G++  +  +  +    +++ + +     ++ +R  ++  + D++ + A  +G+   
Sbjct: 132 Y---GVEDADYAISQLAQTTMRSEIGRLTLDHVLRERQSLNIHITDAINKAAESWGIRCL 188

Query: 543 DISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAK 722
              I  +   +    A+  +QV+             AE+QK+A ++ +EG  QAA+ +A+
Sbjct: 189 RHEIRDIRPPESVVMAMH-QQVS-------------AERQKRAEILESEGKRQAAINVAE 234


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 642 VEKAEQQKKAAVIAAEGDAQAAVLLA 719
           +E+ E+QK AA  AAE +AQ A   A
Sbjct: 213 IEREEEQKAAAAAAAEEEAQLAAQTA 238


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 642 VEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAG-EGLVELRRIEAAED 782
           +  +E+  + A I+A GD     LLAK+    G EG++ ++      D
Sbjct: 169 ITTSEEISQVATISANGDTHIGELLAKAMERVGKEGVITVKEGRTISD 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,196,649
Number of Sequences: 5004
Number of extensions: 52141
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 663396606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)