Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_B18
(1224 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-9|AAK27865.1| 275|Caenorhabditis elegans Mitochondrial... 338 4e-93
U28940-7|AAA68353.2| 294|Caenorhabditis elegans Mitochondrial p... 221 1e-57
U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 39 0.008
U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 39 0.008
U61956-5|AAB03178.2| 286|Caenorhabditis elegans Serpentine rece... 29 5.1
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 29 5.1
Z66500-5|CAA91306.1| 168|Caenorhabditis elegans Hypothetical pr... 29 6.7
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical... 29 8.8
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ... 29 8.8
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ... 29 8.8
>AC087079-9|AAK27865.1| 275|Caenorhabditis elegans Mitochondrial
prohibitin complexprotein 1 protein.
Length = 275
Score = 338 bits (831), Expect = 4e-93
Identities = 169/235 (71%), Positives = 195/235 (82%)
Frame = +3
Query: 150 AVLFXRFAGVKQLVVGAGTHFFIPWVQRPIXFXIRSRPSNVPXXTGSKALQNVNITLRIL 329
AV+F RF+GVK VVG GTHF IPWVQ+PI F IRS P V TGSK LQNVNITLRIL
Sbjct: 39 AVIFDRFSGVKNEVVGEGTHFLIPWVQKPIIFDIRSTPRAVTTITGSKDLQNVNITLRIL 98
Query: 330 FSPVPDQLPSIYTXLGIDYXEXVLPSITSEVLKAVVAQFDAGXLITQRXXVSQKVNDSLT 509
P PD+LP+IY +G+DY E VLPSIT+EVLKAVVAQFDA +ITQR VSQ+ + +L
Sbjct: 99 HRPSPDRLPNIYLNIGLDYAERVLPSITNEVLKAVVAQFDAHEMITQREVVSQRASVALR 158
Query: 510 ERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAE 689
ERAAQFGL+LDDI+ITHL FG+EFT+AVE+KQVAQQEAEKAR+LVEKAEQ K AAV AE
Sbjct: 159 ERAAQFGLLLDDIAITHLNFGREFTEAVEMKQVAQQEAEKARYLVEKAEQMKIAAVTTAE 218
Query: 690 GDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLAKSRNVTYLPHGQNVLLNL 854
GDAQAA LLAK+F SAG+GLVELR+IEAAE+IA ++AK++NVTYLP Q LLNL
Sbjct: 219 GDAQAAKLLAKAFASAGDGLVELRKIEAAEEIAERMAKNKNVTYLPGNQQTLLNL 273
>U28940-7|AAA68353.2| 294|Caenorhabditis elegans Mitochondrial
prohibitin complexprotein 2 protein.
Length = 294
Score = 221 bits (539), Expect = 1e-57
Identities = 115/237 (48%), Positives = 160/237 (67%)
Frame = +3
Query: 144 HSAVLFXRFAGVKQLVVGAGTHFFIPWVQRPIXFXIRSRPSNVPXXTGSKALQNVNITLR 323
H A++F R G+ + G HF IPW Q PI + IR+RP+ + TGSK LQ VNI LR
Sbjct: 47 HRAIMFNRIGGLSTDLYKEGLHFRIPWFQYPIIYDIRARPNQIRSPTGSKDLQMVNIGLR 106
Query: 324 ILFSPVPDQLPSIYTXLGIDYXEXVLPSITSEVLKAVVAQFDAGXLITQRXXVSQKVNDS 503
+L P P+ L IY LG ++ E VLPSI +EVLK VVA+F+A LITQR VS V +
Sbjct: 107 VLSRPNPEHLVHIYRTLGQNWEERVLPSICNEVLKGVVAKFNASQLITQRQQVSMLVRKT 166
Query: 504 LTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQKKAAVIA 683
L ERA F +ILDD+S+T L F +++ AVE KQVA QEA++A F VE+A+QQK+ ++
Sbjct: 167 LIERALDFNIILDDVSLTELAFSPQYSAAVEAKQVAAQEAQRATFYVERAKQQKQEKIVQ 226
Query: 684 AEGDAQAAVLLAKSFGSAGEGLVELRRIEAAEDIAYQLAKSRNVTYLPHGQNVLLNL 854
AEG+A++A LL ++ + G ++LR+I AA+ IA +++S N TYLP G ++LN+
Sbjct: 227 AEGEAESAKLLGEAMKN-DPGFLKLRKIRAAQKIARIVSESGNKTYLPTG-GLMLNI 281
>U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein
1, isoform a protein.
Length = 330
Score = 38.7 bits (86), Expect = 0.008
Identities = 45/218 (20%), Positives = 93/218 (42%), Gaps = 5/218 (2%)
Frame = +3
Query: 150 AVLFXRFAGVKQLVVGAGTHFFIPWVQRPIXFXIRSRPSNVPXXTGSKALQNVNITLRI- 326
AV+F R + V G G F IP + + +R NVP + L ++T+ +
Sbjct: 73 AVVF-RLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASYNVP---SQEILSRDSVTVSVD 128
Query: 327 --LFSPVPDQLPSIYTXLGIDYXEXVLPSITSEVLKAVVAQFDAGXLITQRXXVSQKVND 500
++ V D + S+ +G+ + L+ ++ +++ R +S +
Sbjct: 129 AVVYFKVFDPITSV---VGVGNATDSTKLLAQTTLRTILGTHTLSEILSDREKISADMKI 185
Query: 501 SLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQKKAAVI 680
SL E +G+ ++ + + + + +A+ + A ++A A +I
Sbjct: 186 SLDEATEPWGIKVERVELRDVRLPSQMQRAMAAEAEATRDAG--------------AKII 231
Query: 681 AAEGDAQAAVLLAK--SFGSAGEGLVELRRIEAAEDIA 788
AAEG+ +A+ LA+ + S EG ++LR + I+
Sbjct: 232 AAEGELRASAALAEAATIISKSEGAMQLRYLHTLNAIS 269
>U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein
1, isoform b protein.
Length = 325
Score = 38.7 bits (86), Expect = 0.008
Identities = 45/218 (20%), Positives = 93/218 (42%), Gaps = 5/218 (2%)
Frame = +3
Query: 150 AVLFXRFAGVKQLVVGAGTHFFIPWVQRPIXFXIRSRPSNVPXXTGSKALQNVNITLRI- 326
AV+F R + V G G F IP + + +R NVP + L ++T+ +
Sbjct: 73 AVVF-RLGRLVPDVKGPGIFFIIPCIDTFLNIDLRVASYNVP---SQEILSRDSVTVSVD 128
Query: 327 --LFSPVPDQLPSIYTXLGIDYXEXVLPSITSEVLKAVVAQFDAGXLITQRXXVSQKVND 500
++ V D + S+ +G+ + L+ ++ +++ R +S +
Sbjct: 129 AVVYFKVFDPITSV---VGVGNATDSTKLLAQTTLRTILGTHTLSEILSDREKISADMKI 185
Query: 501 SLTERAAQFGLILDDISITHLTFGKEFTQAVELKQVAQQEAEKARFLVEKAEQQKKAAVI 680
SL E +G+ ++ + + + + +A+ + A ++A A +I
Sbjct: 186 SLDEATEPWGIKVERVELRDVRLPSQMQRAMAAEAEATRDAG--------------AKII 231
Query: 681 AAEGDAQAAVLLAK--SFGSAGEGLVELRRIEAAEDIA 788
AAEG+ +A+ LA+ + S EG ++LR + I+
Sbjct: 232 AAEGELRASAALAEAATIISKSEGAMQLRYLHTLNAIS 269
>U61956-5|AAB03178.2| 286|Caenorhabditis elegans Serpentine
receptor, class x protein20 protein.
Length = 286
Score = 29.5 bits (63), Expect = 5.1
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = -3
Query: 976 NAILHIVCITNAKHRIKFRLYCTFFINIQLVNLTLI*FCVGRFSS 842
+A L I +H YC F NI LVN TLI + F S
Sbjct: 149 HADLWIFSYPETEHCNHLTWYCDFIFNIVLVNFTLILNLIAAFKS 193
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 29.5 bits (63), Expect = 5.1
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +3
Query: 585 QAVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 764
+A + KQ+ EAEKAR EKA +++K A + +A AA + E RR
Sbjct: 1155 RAAKTKQM--DEAEKARLEAEKAAEKEKKAKERKKMEASAAAAPESTNSITAR---EERR 1209
Query: 765 IEAAEDI 785
I+ AE++
Sbjct: 1210 IQQAEEM 1216
>Z66500-5|CAA91306.1| 168|Caenorhabditis elegans Hypothetical
protein T05C12.5 protein.
Length = 168
Score = 29.1 bits (62), Expect = 6.7
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 582 TQAVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGS 734
T +V +Q+ + A+ R L+EK ++ K V + + + +++ KSF S
Sbjct: 27 TSSVAKRQIESKNAQLLRQLIEKKNKKLKKKVYSNAEEQEIDLIIQKSFDS 77
>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
protein Y51H4A.12 protein.
Length = 1677
Score = 28.7 bits (61), Expect = 8.8
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = +3
Query: 585 QAVELKQVAQQEAEKARFLVEKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEG-----L 749
+A + KQ+ EAEKAR EKA +++K A E + + + S +A E
Sbjct: 1163 RAAKTKQM--DEAEKARLEAEKAAEKEKKAKEREEAKERKKMEVEASAAAAPESSNSITA 1220
Query: 750 VELRRIEAAEDI 785
E RRI+ AE++
Sbjct: 1221 REERRIQQAEEM 1232
>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
protein R148.3a protein.
Length = 1115
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 621 AEKARFLV-EKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 764
A +A FL E+A Q+++A A DAQA +A GL+EL R
Sbjct: 437 AGEAEFLKWEEARQKREAVAAAPYEDAQAHQFVASPPPHVSSGLIELIR 485
>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
protein R148.3b protein.
Length = 1130
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 621 AEKARFLV-EKAEQQKKAAVIAAEGDAQAAVLLAKSFGSAGEGLVELRR 764
A +A FL E+A Q+++A A DAQA +A GL+EL R
Sbjct: 449 AGEAEFLKWEEARQKREAVAAAPYEDAQAHQFVASPPPHVSSGLIELIR 497
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,892,024
Number of Sequences: 27780
Number of extensions: 297351
Number of successful extensions: 724
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3380764392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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