Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B17
         (1248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...   199   6e-52
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    91   3e-19
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    52   1e-07
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    26   9.5  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    26   9.5  
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    26   9.5  

>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score =  199 bits (486), Expect = 6e-52
 Identities = 93/124 (75%), Positives = 110/124 (88%)
 Frame = +2

Query: 266 AVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELIIMAADAEPLE 445
           +VNPKA+PLAD+ LT +IL+LVQQA++YKQLRKGANEATKTLNRG+SE I+MAAD EP+E
Sbjct: 2   SVNPKAFPLADSGLTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIE 61

Query: 446 IVLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQEIE 625
           I+LH+P+LCEDKNVPYVFV SK ALGRACGVSRP+IS SIT NE S L PQIQ I+  IE
Sbjct: 62  ILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITTNEASDLLPQIQAIKLAIE 121

Query: 626 RLLV 637
           +LL+
Sbjct: 122 KLLI 125


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 91.1 bits (216), Expect = 3e-19
 Identities = 41/107 (38%), Positives = 64/107 (59%)
 Frame = +2

Query: 266 AVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELIIMAADAEPLE 445
           A+ P A PLA   L  K++  V++A+  K + +G  E  K + +G   L+I+A D  P++
Sbjct: 24  ALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMD 83

Query: 446 IVLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQ 586
           ++ HIP+LCED NVPY++  SK+ LG A    RP  SC + +  G +
Sbjct: 84  VISHIPVLCEDNNVPYLYTVSKELLGEASNTKRP-TSCVMIVPGGKK 129


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 52.4 bits (120), Expect = 1e-07
 Identities = 25/95 (26%), Positives = 48/95 (50%)
 Frame = +2

Query: 239 IVNMAETEAAVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELII 418
           ++N    E A   K   +A+A   A   +    +     ++ G N     +    ++L++
Sbjct: 93  LLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEAKKAKLVL 152

Query: 419 MAADAEPLEIVLHIPILCEDKNVPYVFVRSKQALG 523
           +A+D +P+E+V+ +P LC+   VPY  V++K  LG
Sbjct: 153 IASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +2

Query: 233 RGIVNMAETEAAVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSEL 412
           RG+ N++  E    P  Y L D  L  K  +  +    Y    +G+N + + L RGL   
Sbjct: 414 RGLQNLSLVEEI--PSLYSLTDTLLM-KAPSSGEANQLYTVCGRGSNSSLRQLRRGLETT 470

Query: 413 IIMAAD 430
            I+A++
Sbjct: 471 EIVASE 476


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 329 VQQATNYKQLRKGANEATKTLNRGLSELIIMAADAEPLEIV 451
           V++  N K  R G N  TKT    ++ L  + ++A+ LE++
Sbjct: 7   VKRYFNLKSSRIGMNPQTKTFEGAINRLNSLQSNAKVLEVL 47


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 577 LIDGYRARYDGSGNTASTTECLLRPNKHIWHIL 479
           +I GY+ R D SG   ST    L  N+   HIL
Sbjct: 263 VIKGYKGRVDRSGLDCSTLLASLYSNEFDMHIL 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,967
Number of Sequences: 5004
Number of extensions: 55387
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 679334062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)