Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_B17
(1248 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 203 2e-52
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 187 1e-47
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 87 2e-17
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 87 4e-17
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 53 5e-07
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 50 3e-06
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 36 0.050
07_03_1411 + 26379556-26379620,26379883-26379940,26380057-263802... 30 4.4
04_04_0172 + 23290421-23290519,23291564-23291677,23291783-232918... 30 4.4
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 29 7.6
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 203 bits (496), Expect = 2e-52
Identities = 93/127 (73%), Positives = 112/127 (88%)
Frame = +2
Query: 257 TEAAVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELIIMAADAE 436
++ VNPKAYPLADA LT IL+LVQQA+NYKQL+KGANEATKTLNRG+SE ++MAAD E
Sbjct: 2 SQEVVNPKAYPLADAQLTMTILDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADTE 61
Query: 437 PLEIVLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQ 616
PLEI+LH+P+L EDKNVPYVFV SKQALGRACGV+RP+I+CS+T NEGSQLK IQ ++
Sbjct: 62 PLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEGSQLKTPIQNLKD 121
Query: 617 EIERLLV 637
IE+LL+
Sbjct: 122 AIEKLLI 128
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 187 bits (456), Expect = 1e-47
Identities = 86/125 (68%), Positives = 104/125 (83%)
Frame = +2
Query: 263 AAVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELIIMAADAEPL 442
A VNPKAYPLAD+ L I LV QA NYKQL+KGANEATKTLNRG++E ++MAADAEPL
Sbjct: 2 AEVNPKAYPLADSQLAQAIQELVSQAANYKQLKKGANEATKTLNRGIAEFVVMAADAEPL 61
Query: 443 EIVLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQLKPQIQTIQQEI 622
EI+LH+P+L EDKNVPYVFV SKQALGRACGV+RP+I+CS+T NE S L+ I ++ I
Sbjct: 62 EILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASNLRDPINNLKVAI 121
Query: 623 ERLLV 637
E+LL+
Sbjct: 122 EKLLI 126
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 87.4 bits (207), Expect = 2e-17
Identities = 41/106 (38%), Positives = 65/106 (61%)
Frame = +2
Query: 254 ETEAAVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELIIMAADA 433
+T A+ P A PLA L + L LV++A+ K L++G E K++ RG L I+A +
Sbjct: 11 KTPVALAPIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNI 70
Query: 434 EPLEIVLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITI 571
P++++ H+PILCE+ N+PYV+V SK+ L A RP +C + +
Sbjct: 71 SPIDVITHVPILCEEANIPYVYVPSKEDLATAGTTKRP--TCCVLV 114
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 86.6 bits (205), Expect = 4e-17
Identities = 44/131 (33%), Positives = 73/131 (55%)
Frame = +2
Query: 242 VNMAETEAAVNPKAYPLADAALTAKILNLVQQATNYKQLRKGANEATKTLNRGLSELIIM 421
V + A+ P A PLA L + L LV++A+ K L++G E K++ RG L ++
Sbjct: 7 VEKKKAPTALAPIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVI 66
Query: 422 AADAEPLEIVLHIPILCEDKNVPYVFVRSKQALGRACGVSRPIISCSITINEGSQLKPQI 601
A + P++++ H+PILCE+ N+PY++V SK+ L A RP +C + + KP
Sbjct: 67 AGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGTTKRP--TCCVLV----MTKPAK 120
Query: 602 QTIQQEIERLL 634
I +E++ L
Sbjct: 121 GEINEEVKEKL 131
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 52.8 bits (121), Expect = 5e-07
Identities = 22/79 (27%), Positives = 41/79 (51%)
Frame = +2
Query: 356 LRKGANEATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDKNVPYVFVRSKQALGRACG 535
++ G N T + + ++L+++A D +P+E+V+ +P LC VPY V+ K LG
Sbjct: 128 VKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVH 187
Query: 536 VSRPIISCSITINEGSQLK 592
+ C T+ +L+
Sbjct: 188 KKTASVLCLTTVKNEDKLE 206
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 50.4 bits (115), Expect = 3e-06
Identities = 20/79 (25%), Positives = 41/79 (51%)
Frame = +2
Query: 356 LRKGANEATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDKNVPYVFVRSKQALGRACG 535
++ G + T + + ++L+++A D +P+E+V+ +P LC +PY V+ K LG
Sbjct: 113 VKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVH 172
Query: 536 VSRPIISCSITINEGSQLK 592
+ C T+ +L+
Sbjct: 173 KKTASVLCLTTVKNEDKLE 191
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 36.3 bits (80), Expect = 0.050
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +2
Query: 356 LRKGANEATKTLNRGLSELIIMAADAEPLEIVLHIPILCEDKNV 487
++ G N T + + ++L+++A D +P+E+V+ +P LC +
Sbjct: 112 VKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEI 155
>07_03_1411 +
26379556-26379620,26379883-26379940,26380057-26380200,
26380367-26380426,26380789-26380956,26381043-26381117
Length = 189
Score = 29.9 bits (64), Expect = 4.4
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 353 QLRKGANEATKTLNRGLSEL--IIMAADAEPLEIVLHIPILCEDKNVPYVFVRSKQ 514
Q RKG R L L +++AAD P + HIP L + VP + ++ +
Sbjct: 89 QSRKGHESIAPFKERVLYSLPVVLVAADCNPKWLTKHIPTLASTRQVPVLCLKDNK 144
>04_04_0172 +
23290421-23290519,23291564-23291677,23291783-23291878,
23291955-23292039,23292262-23292317,23292432-23292510,
23292599-23292733,23292842-23293077,23293173-23293505
Length = 410
Score = 29.9 bits (64), Expect = 4.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 577 LIDGYRARYDGSGNTASTTECLLRPNKH 494
+++G DG G +T ECLL PN++
Sbjct: 165 VLEGGSIHVDGEGTCITTEECLLNPNRN 192
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 29.1 bits (62), Expect = 7.6
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = -1
Query: 570 MVIEQDMMGLETPQARPSACLDLTNTYGTFLSSHRIGM*RTISRGSASAAIMMSSDRPRL 391
+V ++ G+ + Q RP +DL +T GTF++ +RI R +S R RL
Sbjct: 629 LVEKEQPDGMMSKQVRPYL-MDLGSTNGTFINENRIEPSRYYELFEKDTIKFGNSSRDRL 687
Query: 390 RVF 382
+F
Sbjct: 688 NIF 690
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,607,062
Number of Sequences: 37544
Number of extensions: 434212
Number of successful extensions: 909
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3852724812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -