Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B16
         (1231 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M10938-1|AAA36153.1|  493|Homo sapiens protein ( Human epidermal...    27   2.9  
M60858-1|AAA59954.1|  707|Homo sapiens nucleolin protein.              31   8.6  
BC006516-1|AAH06516.3|  482|Homo sapiens NCL protein protein.          31   8.6  
BC006494-1|AAH06494.3|  482|Homo sapiens NCL protein protein.          31   8.6  
BC002343-1|AAH02343.3|  482|Homo sapiens NCL protein protein.          31   8.6  
AK127608-1|BAC87055.1|  603|Homo sapiens protein ( Homo sapiens ...    31   8.6  
AK091742-1|BAC03738.1|  687|Homo sapiens protein ( Homo sapiens ...    31   8.6  
AC017104-2|AAY24247.1|  710|Homo sapiens unknown protein.              31   8.6  

>M10938-1|AAA36153.1|  493|Homo sapiens protein ( Human epidermal
           67-kDa type II keratin mRNA. ).
          Length = 493

 Score = 27.5 bits (58), Expect(2) = 2.9
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = +1

Query: 346 GGGGGGRGXXXRV*GRGEGGXGXXGAXXXPPXXKXGIRSLKGGXXV 483
           GG GGG G      GRG GG    G+         G++S  G   V
Sbjct: 438 GGSGGGGGGSSG--GRGSGGGSSGGSSGGRGSSSGGVKSSGGSSSV 481



 Score = 23.8 bits (49), Expect(2) = 2.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 319 GXCXMFXXXGGGGGGRG 369
           G C  +   GGGGGGRG
Sbjct: 384 GGCS-YGSGGGGGGGRG 399


>M60858-1|AAA59954.1|  707|Homo sapiens nucleolin protein.
          Length = 707

 Score = 31.1 bits (67), Expect = 8.6
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +1

Query: 346 GGGGGGRGXXXRV*GRGEGGXGXXG 420
           GG GGGRG      GRG GG G  G
Sbjct: 661 GGRGGGRGGRGGFGGRGRGGFGGRG 685


>BC006516-1|AAH06516.3|  482|Homo sapiens NCL protein protein.
          Length = 482

 Score = 31.1 bits (67), Expect = 8.6
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +1

Query: 346 GGGGGGRGXXXRV*GRGEGGXGXXG 420
           GG GGGRG      GRG GG G  G
Sbjct: 436 GGRGGGRGGRGGFGGRGRGGFGGRG 460


>BC006494-1|AAH06494.3|  482|Homo sapiens NCL protein protein.
          Length = 482

 Score = 31.1 bits (67), Expect = 8.6
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +1

Query: 346 GGGGGGRGXXXRV*GRGEGGXGXXG 420
           GG GGGRG      GRG GG G  G
Sbjct: 436 GGRGGGRGGRGGFGGRGRGGFGGRG 460


>BC002343-1|AAH02343.3|  482|Homo sapiens NCL protein protein.
          Length = 482

 Score = 31.1 bits (67), Expect = 8.6
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +1

Query: 346 GGGGGGRGXXXRV*GRGEGGXGXXG 420
           GG GGGRG      GRG GG G  G
Sbjct: 436 GGRGGGRGGRGGFGGRGRGGFGGRG 460


>AK127608-1|BAC87055.1|  603|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45706 fis, clone FEBRA2028457, highly  similar
           to Nucleolin. ).
          Length = 603

 Score = 31.1 bits (67), Expect = 8.6
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +1

Query: 346 GGGGGGRGXXXRV*GRGEGGXGXXG 420
           GG GGGRG      GRG GG G  G
Sbjct: 557 GGRGGGRGGRGGFGGRGRGGFGGRG 581


>AK091742-1|BAC03738.1|  687|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34423 fis, clone HHDPC2008123, highly similar to
           NUCLEOLIN. ).
          Length = 687

 Score = 31.1 bits (67), Expect = 8.6
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +1

Query: 346 GGGGGGRGXXXRV*GRGEGGXGXXG 420
           GG GGGRG      GRG GG G  G
Sbjct: 641 GGRGGGRGGRGGFGGRGRGGFGGRG 665


>AC017104-2|AAY24247.1|  710|Homo sapiens unknown protein.
          Length = 710

 Score = 31.1 bits (67), Expect = 8.6
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +1

Query: 346 GGGGGGRGXXXRV*GRGEGGXGXXG 420
           GG GGGRG      GRG GG G  G
Sbjct: 664 GGRGGGRGGRGGFGGRGRGGFGGRG 688


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,174,913
Number of Sequences: 237096
Number of extensions: 1220943
Number of successful extensions: 12152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8981
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 17449654910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)