Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_B16
(1231 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098992-4|AAK73869.2| 250|Caenorhabditis elegans Hypothetical ... 34 0.24
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 30 2.9
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 30 3.9
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 30 3.9
AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical ... 29 5.1
AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical ... 29 5.1
AF036692-4|AAS47682.1| 318|Caenorhabditis elegans Serpentine re... 29 6.7
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 29 6.7
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 29 8.9
>AF098992-4|AAK73869.2| 250|Caenorhabditis elegans Hypothetical
protein F53C3.6a protein.
Length = 250
Score = 33.9 bits (74), Expect = 0.24
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +1
Query: 346 GGGGGGRGXXXR---V*GRGEGGXGXXGAXXXPPXXKXGIRSLKGG 474
GGGGGGRG V GRG GG G G + S +GG
Sbjct: 28 GGGGGGRGSSGARGGVGGRGGGGRGGGGGGFRSGGARSSFSSFRGG 73
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 30.3 bits (65), Expect = 2.9
Identities = 15/25 (60%), Positives = 15/25 (60%)
Frame = +1
Query: 346 GGGGGGRGXXXRV*GRGEGGXGXXG 420
GGGGGGRG GRG GG G G
Sbjct: 98 GGGGGGRGGGGG--GRGGGGGGGGG 120
Score = 28.7 bits (61), Expect = 8.9
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = +1
Query: 346 GGGGGGRGXXXRV*GRGEGGXG 411
GGGGGGRG GRG GG G
Sbjct: 115 GGGGGGRGGGGG--GRGGGGRG 134
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.9 bits (64), Expect = 3.9
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +1
Query: 331 MFXXXGGGGGGRGXXXRV*GRGE-GGXGXXGAXXXPP 438
+F GGGGGG G G G GG G G PP
Sbjct: 19 LFPSGGGGGGGGGCGGGCGGGGGCGGGGGCGGGCAPP 55
Score = 29.1 bits (62), Expect = 6.7
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = +1
Query: 319 GXCXMFXXXGGGGGGRGXXXRV*GRGEGGXGXXGAXXXPP 438
G C GGGGGG G G G GG G G PP
Sbjct: 77 GGCGGGGGCGGGGGGCGGG----GGGCGGGGGCGGGCAPP 112
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 29.9 bits (64), Expect = 3.9
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = +1
Query: 349 GGGGGRGXXXRV*GRGEGGXGXXGAXXXPP 438
GGGGGRG GRG GG G P
Sbjct: 169 GGGGGRGRGRGSGGRGRGGFNRGGRFNGAP 198
>AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical
protein E02D9.1b protein.
Length = 315
Score = 29.5 bits (63), Expect = 5.1
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 346 GGGGGGRGXXXRV*GRGEGGXGXXGAXXXPPXXKXGIRSLKG 471
GGG GGRG G GG G G P + G+ + G
Sbjct: 261 GGGRGGRGGRGGFRGGFRGGRGGFGGPGGPMGGRGGMGGMGG 302
>AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical
protein E02D9.1c protein.
Length = 317
Score = 29.5 bits (63), Expect = 5.1
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 346 GGGGGGRGXXXRV*GRGEGGXGXXGAXXXPPXXKXGIRSLKG 471
GGG GGRG G GG G G P + G+ + G
Sbjct: 261 GGGRGGRGGRGGFRGGFRGGRGGFGGPGGPMGGRGGMGGMGG 302
>AF036692-4|AAS47682.1| 318|Caenorhabditis elegans Serpentine
receptor, class x protein14 protein.
Length = 318
Score = 29.1 bits (62), Expect = 6.7
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 308 SIFFXXNC-FCXHFXFSXSCFXIKPFFS 228
SIF NC FC F FS S F I P F+
Sbjct: 145 SIFSRQNCIFCLIFIFSLSFFEIGPLFA 172
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 29.1 bits (62), Expect = 6.7
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 421 RXXXPXPLPRALIPXXXLPAPPPXPP 344
R P P+P A LP PPP PP
Sbjct: 1447 RPQSPDPVPAAPAENCDLPPPPPEPP 1472
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 28.7 bits (61), Expect = 8.9
Identities = 19/51 (37%), Positives = 19/51 (37%)
Frame = +1
Query: 319 GXCXMFXXXGGGGGGRGXXXRV*GRGEGGXGXXGAXXXPPXXKXGIRSLKG 471
G F GGGGGG G G G GG G G I SL G
Sbjct: 45 GLASNFFGGGGGGGGGGGGGGF-GGGNGGFGGGGGGSGGGGGGNNIGSLVG 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,388,490
Number of Sequences: 27780
Number of extensions: 149132
Number of successful extensions: 1647
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3401633308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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