Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B15
         (1219 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    26   0.77 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   9.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   9.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   9.5  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 405 VPIIVVTIPGSYCIICISGILKFHEREWRTFS 310
           VP   V I  SYC  CISG   F    W  +S
Sbjct: 286 VPFFCVNIVTSYCKTCISG-RAFQVLTWLGYS 316


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 680 TAYFISSCLKNSTTPDPSLKVSAKHTSPASRIWSLRSCQEPE 555
           ++ F   CL  + +PDP++    K T   S + +L  C++PE
Sbjct: 189 SSLFSKGCLVGTWSPDPAINRRLKET--YSNMCAL--CEKPE 226


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 680 TAYFISSCLKNSTTPDPSLKVSAKHTSPASRIWSLRSCQEPE 555
           ++ F   CL  + +PDP++    K T   S + +L  C++PE
Sbjct: 189 SSLFSKGCLVGTWSPDPAINRRLKET--YSNMCAL--CEKPE 226


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 680 TAYFISSCLKNSTTPDPSLKVSAKHTSPASRIWSLRSCQEPE 555
           ++ F   CL  + +PDP++    K T   S + +L  C++PE
Sbjct: 189 SSLFSKGCLVGTWSPDPAINRRLKET--YSNMCAL--CEKPE 226


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 878 HAPVRGHITTDSHKPXRSVTR 940
           H P   HIT ++ KP ++  R
Sbjct: 497 HKPFNFHITINADKPMKAAIR 517


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 878 HAPVRGHITTDSHKPXRSVTR 940
           H P   HIT ++ KP ++  R
Sbjct: 497 HKPFNFHITINADKPMKAAIR 517


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 523 EYRVLVTGLPPSGSWQDL 576
           EY +   GLPPS +  DL
Sbjct: 440 EYEIPAHGLPPSATRYDL 457


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,516
Number of Sequences: 438
Number of extensions: 5014
Number of successful extensions: 21
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41693346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)