Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B14
         (1216 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    95   1e-21
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   8.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   8.1  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 94.7 bits (225), Expect = 1e-21
 Identities = 56/187 (29%), Positives = 103/187 (55%), Gaps = 9/187 (4%)
 Frame = +1

Query: 400 NEHGIKAVGRHIPPALKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQ 579
           +E  +K  G   PP +  F    +R +    L++ V + GY++PT +Q+ A+  +L  R 
Sbjct: 142 DEIEVKVTGNDAPPPITSFETSGLRPH----LLENVKKSGYTKPTAIQKYAIPVILSGRD 197

Query: 580 IVACAPTGSGKTAAFIVPLLHTLGTHQGGPRG---------LILCPTRELAHQIYREALR 732
           +++CA TGSGKTAAF++P++H L + +  P           +I+ PTRELA QI  +  +
Sbjct: 198 LMSCAQTGSGKTAAFMLPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKK 257

Query: 733 LSASTQLRVTVVKNLKESKVKEREATFRKSDIVISTPNRLCYLLNQDQVNISLXKVRWLI 912
            + ++ ++V V+     S   +R        I+++TP RL   +N+   N+S   +++ +
Sbjct: 258 FAYNSTVKVAVIYG-GTSTNHQRGRILGGCHILVATPGRLKDFVNRG--NVSFNSLKYFV 314

Query: 913 IDEXDKL 933
           +DE D++
Sbjct: 315 LDEADRM 321


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 549 SHGLHVGGPSNSGVRSDG 602
           S  L  GGP N  VRS G
Sbjct: 76  SSSLSYGGPVNDDVRSPG 93


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 549 SHGLHVGGPSNSGVRSDG 602
           S  L  GGP N  VRS G
Sbjct: 232 SSSLSYGGPVNDDVRSPG 249


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,062
Number of Sequences: 336
Number of extensions: 3756
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 35452545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)