Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_B14
(1216 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 105 2e-23
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 93 9e-20
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 92 1e-19
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 91 3e-19
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 89 9e-19
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 89 2e-18
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 88 3e-18
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 86 8e-18
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 82 2e-16
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 80 7e-16
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 79 1e-15
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 77 4e-15
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 77 5e-15
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 74 3e-14
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 74 3e-14
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 72 2e-13
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 66 7e-12
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 66 7e-12
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 66 7e-12
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 65 2e-11
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 64 5e-11
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 60 6e-10
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 59 1e-09
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 32 0.14
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 32 0.14
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 31 0.24
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 31 0.24
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 29 0.98
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 28 2.3
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 28 3.0
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 5.3
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 5.3
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 27 6.9
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 105 bits (251), Expect = 2e-23
Identities = 59/149 (39%), Positives = 88/149 (59%), Gaps = 2/149 (1%)
Frame = +1
Query: 493 LVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGTH-QGGP 669
L + + + +E T +QR A+ + R ++ACAPTGSGKT A++ P+L L H GG
Sbjct: 57 LCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGY 116
Query: 670 RGLILCPTRELAHQIYREALRLSASTQLRVTVVKNLKESKVKEREATFR-KSDIVISTPN 846
R +I+ PTREL QIYR+A +LS T L++ + E K++E+ R K D+ I TP
Sbjct: 117 RAIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNE-KIQEKAPKLREKYDMCIGTPM 175
Query: 847 RLCYLLNQDQVNISLXKVRWLIIDEXDKL 933
RL + Q +S KV + ++DE D+L
Sbjct: 176 RLVQAI---QTGLSFEKVEFFVMDEADRL 201
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 92.7 bits (220), Expect = 9e-20
Identities = 61/189 (32%), Positives = 100/189 (52%), Gaps = 5/189 (2%)
Frame = +1
Query: 382 EENRFRNEHGIKAVGRHIPPALKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMAC 561
E +R E I G ++P + F + P ++ V Q G+ PTP+Q+QA
Sbjct: 100 EVTEYRKEKEIVVHGLNVPKPVTTFEEA----GFPNYVLKEVKQLGFEAPTPIQQQAWPM 155
Query: 562 MLEDRQIVACAPTGSGKTAAFIVP-LLH----TLGTHQGGPRGLILCPTRELAHQIYREA 726
+ R +V + TGSGKT ++ +P ++H L + GP L+L PTRELA QI +E
Sbjct: 156 AMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQEC 215
Query: 727 LRLSASTQLRVTVVKNLKESKVKEREATFRKSDIVISTPNRLCYLLNQDQVNISLXKVRW 906
+ S+++R T V + R+ R +I I+TP RL +L+ ++ N L +V +
Sbjct: 216 TKFGKSSRIRNTCVYGGVPRGPQIRD-LIRGVEICIATPGRLLDMLDSNKTN--LRRVTY 272
Query: 907 LIIDEXDKL 933
L++DE D++
Sbjct: 273 LVLDEADRM 281
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 92.3 bits (219), Expect = 1e-19
Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 3/152 (1%)
Frame = +1
Query: 487 QALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGT--HQ 660
Q L+ + + G+ PTP+QR+ + +LE R +V A TGSGKTAAF++P++ L +
Sbjct: 78 QTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLAN 137
Query: 661 GGPRGLILCPTRELAHQIYREALRLSASTQLR-VTVVKNLKESKVKEREATFRKSDIVIS 837
R LIL P RELA Q + S T LR V +V + S ++ K DIV++
Sbjct: 138 SNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGV--SLEEQFSLLSGKPDIVVA 195
Query: 838 TPNRLCYLLNQDQVNISLXKVRWLIIDEXDKL 933
TP R +L + ++ + L + +++ DE D+L
Sbjct: 196 TPGRFLHL--KVEMKLELSSIEYVVFDEADRL 225
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 91.1 bits (216), Expect = 3e-19
Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 2/164 (1%)
Frame = +1
Query: 448 KDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFI 627
K FSDL + L+DT+ EPT +Q +A +LE R + A TGSGKTAAF
Sbjct: 7 KSFSDL----GISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFA 62
Query: 628 VPLLHTLGTHQGGPRGLILCPTRELAHQIYREALRLSASTQLRVTVVKNLKESKVKEREA 807
+P++ G LIL PTRELA QI + L A+ L+ ++ + +++
Sbjct: 63 LPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMD-MIRQSID 121
Query: 808 TFRKSDIVISTPNRLCYLL--NQDQVNISLXKVRWLIIDEXDKL 933
++ +V++TP RL L+ N ++ L ++++L++DE D+L
Sbjct: 122 LSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRL 165
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 89.4 bits (212), Expect = 9e-19
Identities = 49/147 (33%), Positives = 83/147 (56%)
Frame = +1
Query: 493 LVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGTHQGGPR 672
L + + G+ PTP+Q++A+ +L R ++ A TGSGKTAAF +P++ L +
Sbjct: 57 LCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFF 116
Query: 673 GLILCPTRELAHQIYREALRLSASTQLRVTVVKNLKESKVKEREATFRKSDIVISTPNRL 852
++L PTRELA+QI + + S +R V+ + V + A +K +++ TP RL
Sbjct: 117 AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMD-MVTQAVALSKKPHVLVCTPGRL 175
Query: 853 CYLLNQDQVNISLXKVRWLIIDEXDKL 933
L ++ SL +++LI+DE D+L
Sbjct: 176 MDHL-ENTKGFSLKNLKYLIMDEADRL 201
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 88.6 bits (210), Expect = 2e-18
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 3/141 (2%)
Frame = +1
Query: 520 YSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVP---LLHTLGTHQGGPRGLILCP 690
Y EPTP+Q +L R +V A TGSGKT AF +P L+ L ++ PR L++ P
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSP 244
Query: 691 TRELAHQIYREALRLSASTQLRVTVVKNLKESKVKEREATFRKSDIVISTPNRLCYLLNQ 870
TRELA Q Y L T L+ VV + R A + + ++I TP RL L+N
Sbjct: 245 TRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAA--KNASVIIGTPGRLLDLIND 302
Query: 871 DQVNISLXKVRWLIIDEXDKL 933
++ S +V +L++DE D++
Sbjct: 303 GSIDCS--QVGYLVLDEADRM 321
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 87.8 bits (208), Expect = 3e-18
Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 7/167 (4%)
Frame = +1
Query: 448 KDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFI 627
K FSD +N+ L + +C + +PT VQ + + LE + +VA A TGSGKTAA++
Sbjct: 14 KTFSD----FNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYL 69
Query: 628 VPLLHTL------GTHQGGPRGLILCPTRELAHQIYREALRLSASTQLRVTVVK-NLKES 786
+P+L L +Q G L+L PTRELA Q+Y +L+A + + S
Sbjct: 70 IPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSS 129
Query: 787 KVKEREATFRKSDIVISTPNRLCYLLNQDQVNISLXKVRWLIIDEXD 927
+R DIVI+TP+R C + V + L K+++L+IDE D
Sbjct: 130 DTVQRPLLLDLPDIVIATPSR-CVVHVASGV-LPLDKLKFLVIDEAD 174
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 86.2 bits (204), Expect = 8e-18
Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 3/155 (1%)
Frame = +1
Query: 478 NVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTL--- 648
N+ + ++ ++ G+ PT +Q + + L + IV A TGSGKTAAFIVP+L L
Sbjct: 265 NLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYR 324
Query: 649 GTHQGGPRGLILCPTRELAHQIYREALRLSASTQLRVTVVKNLKESKVKEREATFRKSDI 828
R LILCPTRELA Q + A ++++ T + V + K++E+E ++ DI
Sbjct: 325 PKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELR-KRPDI 383
Query: 829 VISTPNRLCYLLNQDQVNISLXKVRWLIIDEXDKL 933
VI+TP R + Q ++ + +++DE D++
Sbjct: 384 VIATPGRFIDHMRNSQ-GFTVENIEIMVMDEADRM 417
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 81.8 bits (193), Expect = 2e-16
Identities = 51/182 (28%), Positives = 92/182 (50%), Gaps = 7/182 (3%)
Frame = +1
Query: 409 GIKAVGRHIPPALKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVA 588
GIK G P + +S + + + GY +PT +Q QA+ + R ++
Sbjct: 405 GIKIRGIDCPKPVTSWSQC----GLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIG 460
Query: 589 CAPTGSGKTAAFIVPLLHTLGTHQ-----GGPRGLILCPTRELAHQIYREALRLSASTQL 753
A TGSGKT AF++P+ + + GP +I+ PTRELA QI+RE +
Sbjct: 461 VAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNI 520
Query: 754 RVTVVKNLKESKVKEREATFRK-SDIVISTPNRLCYLLNQDQVNI-SLXKVRWLIIDEXD 927
R + +K++ A ++ ++IV+ TP R+ +L+ + + +L + +L++DE D
Sbjct: 521 RACCAYG--GAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEAD 578
Query: 928 KL 933
++
Sbjct: 579 RM 580
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 79.8 bits (188), Expect = 7e-16
Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 18/165 (10%)
Frame = +1
Query: 493 LVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHT--------- 645
L+ + GY++PTPVQ+ ++ + R ++ACA TGSGKTA F+ P+L
Sbjct: 180 LLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAV 239
Query: 646 -------LG--THQGGPRGLILCPTRELAHQIYREALRLSASTQLRVTVVKNLKESKVKE 798
+G + P LIL PTREL QI+ E+ + + +R V + + +
Sbjct: 240 PVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQI 299
Query: 799 REATFRKSDIVISTPNRLCYLLNQDQVNISLXKVRWLIIDEXDKL 933
R+ + D++ +TP RL L+ D+ ISL +++L++DE D++
Sbjct: 300 RQID-QGCDLLSATPGRLVDLI--DRGRISLANIKFLVLDEADRM 341
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 79.0 bits (186), Expect = 1e-15
Identities = 45/155 (29%), Positives = 86/155 (55%), Gaps = 2/155 (1%)
Frame = +1
Query: 475 YNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLL-HTLG 651
+++ ++ ++++ G+S+P P+Q + I+ A TGSGKT AF +P+L H L
Sbjct: 127 FSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLR 186
Query: 652 THQGG-PRGLILCPTRELAHQIYREALRLSASTQLRVTVVKNLKESKVKEREATFRKSDI 828
+ L++ PTRELAHQI + + S +RV + + K++ + +
Sbjct: 187 NVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQ-KQQRLLNKHPHV 245
Query: 829 VISTPNRLCYLLNQDQVNISLXKVRWLIIDEXDKL 933
V++TP RL ++N++ + + K++ L++DE D+L
Sbjct: 246 VVATPGRLWSVINENNLTGNFKKIKCLVLDEADRL 280
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 77.4 bits (182), Expect = 4e-15
Identities = 51/187 (27%), Positives = 96/187 (51%), Gaps = 8/187 (4%)
Frame = +1
Query: 397 RNEHGIKAVGRHIPPALKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDR 576
+ ++ I G +P L+++ + +P ++ + + Y EP+ +QR A+ +L+ +
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEA----GLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRK 287
Query: 577 QIVACAPTGSGKTAAFIVPLLHTLG-----THQG---GPRGLILCPTRELAHQIYREALR 732
++ A TGSGKTAAFI+PL+ + T GP ++L PTRELA QI E +
Sbjct: 288 DLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNK 347
Query: 733 LSASTQLRVTVVKNLKESKVKEREATFRKSDIVISTPNRLCYLLNQDQVNISLXKVRWLI 912
+ R V + + + + + + IV++TP RL L + +S + +++
Sbjct: 348 FAEPLGFRCVSVVGGHAFEEQSFQMS-QGAHIVVATPGRLLDCLERRLFVLS--QCTYVV 404
Query: 913 IDEXDKL 933
+DE D++
Sbjct: 405 MDEADRM 411
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 77.0 bits (181), Expect = 5e-15
Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 4/188 (2%)
Frame = +1
Query: 382 EENRFRNEHGIKAVGRHIPPALKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMAC 561
E+ R E I+ + I AL + D + Q + + T +Q+Q +
Sbjct: 14 EKKRKEEEEEIEELNSQIE-ALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPS 72
Query: 562 MLEDRQIVACAPTGSGKTAAFIVPLLHTL----GTHQGGPRGLILCPTRELAHQIYREAL 729
L+ R I+ A TGSGKT AFIVPL+ L T G L++ PTRELA Q + +
Sbjct: 73 ALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLV 132
Query: 730 RLSASTQLRVTVVKNLKESKVKEREATFRKSDIVISTPNRLCYLLNQDQVNISLXKVRWL 909
++ ++ + + KE + + +I++ TP RL ++Q VN ++ L
Sbjct: 133 KIGRLHSFSAGLI--IGGNNYKEEKERLSRMNILVCTPGRLLQHIDQ-AVNFDTSGLQML 189
Query: 910 IIDEXDKL 933
I+DE D++
Sbjct: 190 ILDEADRI 197
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 74.1 bits (174), Expect = 3e-14
Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 3/156 (1%)
Frame = +1
Query: 475 YNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGT 654
Y + + L+ + + G+ P+P+Q +++ L R I+A A G+GKTAAF++P L + T
Sbjct: 49 YYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDT 108
Query: 655 HQGGPRGLILCPTRELAHQIYREALRLSASTQLRVTVV---KNLKESKVKEREATFRKSD 825
+ + LIL PTRELA Q + L ++V V L++ ++ +
Sbjct: 109 KKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTV----H 164
Query: 826 IVISTPNRLCYLLNQDQVNISLXKVRWLIIDEXDKL 933
IV+ TP R+ L + + S + ++DE DKL
Sbjct: 165 IVVGTPGRVLDLAGKGVADFS--ECTTFVMDEADKL 198
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 74.1 bits (174), Expect = 3e-14
Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 12/149 (8%)
Frame = +1
Query: 523 SEPTPVQRQAMACML--EDRQIVACAPTGSGKTAAFIVPLLH-------TLGTHQGGPRG 675
S PT +Q + +L +D+ A TGSGKT A+++P++ L T G
Sbjct: 160 SAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYA 219
Query: 676 LILCPTRELAHQIYREALRLSASTQLRVTVVKN-LKESKVKEREATFRKS-DIVISTPNR 849
+I+ PTREL QIY A +L+ + V N + K K +A RK +I+I TP R
Sbjct: 220 VIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTPGR 279
Query: 850 LC-YLLNQDQVNISLXKVRWLIIDEXDKL 933
L +L N + +++S +VRW+++DE D+L
Sbjct: 280 LADHLENTEALDVS--QVRWVVLDEGDRL 306
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 71.7 bits (168), Expect = 2e-13
Identities = 49/167 (29%), Positives = 87/167 (52%), Gaps = 4/167 (2%)
Frame = +1
Query: 445 LKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAF 624
++ FSDL + N+ +A + + G+ T +Q++++ +L R ++ A TGSGKT AF
Sbjct: 88 IEKFSDLQLSENIQKA----IKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAF 143
Query: 625 IVPLLHTLGTHQGGPRG----LILCPTRELAHQIYREALRLSASTQLRVTVVKNLKESKV 792
++P + L + PR +I+ PTRELA QI+ A L +V ++
Sbjct: 144 LIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIG-GANRR 202
Query: 793 KEREATFRKSDIVISTPNRLCYLLNQDQVNISLXKVRWLIIDEXDKL 933
E + + +++++TP RL L Q+ +R L+IDE D++
Sbjct: 203 AEADKLVKGVNLLVATPGRLLDHL-QNTKGFVFRNLRSLVIDEADRI 248
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 66.5 bits (155), Expect = 7e-12
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Frame = +1
Query: 493 LVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGTHQGGPR 672
L+ +T G+ P+ VQ+ + + ++ A +G GKTA F++ L + G
Sbjct: 62 LLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVS 121
Query: 673 GLILCPTRELAHQIYREALRLSA-STQLRVTVVK---NLKESKVKEREATFRKSDIVIST 840
L+LC TRELA QI E R S +R V N+K+ ++ + + IV++T
Sbjct: 122 VLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKS-KSPHIVVAT 180
Query: 841 PNRLCYLLNQDQVNISLXKVRWLIIDEXDKL 933
P RL L+ + + ++ V+ ++DE DKL
Sbjct: 181 PGRLNALVREKILKVN--SVKHFVLDECDKL 209
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 66.5 bits (155), Expect = 7e-12
Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Frame = +1
Query: 478 NVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTL--- 648
N+ + L + V G+ + TPVQ A+ L+++ +V A TGSGKT A+++P +
Sbjct: 7 NIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRR 66
Query: 649 GTHQGGPRGLILCPTRELAHQIYREALRLSASTQLRVTVVKNL-------KESKVKEREA 807
T + G LI+ PTRELA QI+ L A + K L + + A
Sbjct: 67 DTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGTLTNDLA 126
Query: 808 TFRKSD--IVISTPNRLCYLLNQDQVNISLXKVRWLIIDEXDKL 933
+FR+ + +VI TP RL +L+ +IS + LI+DE D L
Sbjct: 127 SFREKNPSVVIGTPGRLNEMLS----HISSKHLEILILDEADTL 166
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 66.5 bits (155), Expect = 7e-12
Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Frame = +1
Query: 478 NVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGTH 657
N+ + L+ + GY P+ VQ +A+ + + R ++A A +G+GKTA F + +L ++
Sbjct: 27 NLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLS 86
Query: 658 QGGPRGLILCPTRELAHQIYREALRLS--ASTQLRVTVVKNLKESKVKEREATFRKSDIV 831
+ LIL PTRELA QI L L + Q + + +K+ + +V
Sbjct: 87 VRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLD---YGQHVV 143
Query: 832 ISTPNRLCYLLNQDQVNISLXKVRWLIIDEXDKL 933
TP R+ ++ + N+ V+ LI+DE D+L
Sbjct: 144 SGTPGRVTDMIRRR--NLRTRNVKMLILDEADEL 175
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 65.3 bits (152), Expect = 2e-11
Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 9/154 (5%)
Frame = +1
Query: 499 DTVTQCGYSEPTPVQRQAMACMLEDRQ-IVACAPTGSGKTAAFIVPLLHTLGTHQGGPR- 672
+++++ G+ + TPVQ++ + + + + V A TG+GKT AF+ L+ +G PR
Sbjct: 51 NSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFL--LVAFKDVLKGKPRL 108
Query: 673 ------GLILCPTRELAHQIYREALRLSASTQLRVTVVKNLKESKVKEREATFR-KSDIV 831
+IL PTRELA QI+ EA +L+ T +RV+ SK++E A R ++++
Sbjct: 109 NSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIG-GNSKMREENAIRRGNANLL 167
Query: 832 ISTPNRLCYLLNQDQVNISLXKVRWLIIDEXDKL 933
I+TP RL L ++ SL I+DE D+L
Sbjct: 168 IATPGRLEDHLQNPRILESL-STDSFILDEADRL 200
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 63.7 bits (148), Expect = 5e-11
Identities = 41/153 (26%), Positives = 80/153 (52%), Gaps = 1/153 (0%)
Frame = +1
Query: 478 NVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGTH 657
N+ L+ + G+ P+ +Q++A+ +L +R ++A A +G+GKTA F + +L + T
Sbjct: 25 NLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTS 84
Query: 658 QGGPRGLILCPTRELAHQIYREALRLSASTQLRVTVVKNLKESKVKEREATFRKS-DIVI 834
+ LIL PTRELA QI + + L + V + + V++ A + +V+
Sbjct: 85 LKQCQALILAPTRELAQQIQKVVVAL--GDLMNVECHACIGGTLVRDDMAALQAGVHVVV 142
Query: 835 STPNRLCYLLNQDQVNISLXKVRWLIIDEXDKL 933
TP R+ ++ + + V+ ++DE D++
Sbjct: 143 GTPGRVHDMIQRRA--LPTDAVQMFVLDEADEM 173
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 60.1 bits (139), Expect = 6e-10
Identities = 43/166 (25%), Positives = 86/166 (51%), Gaps = 2/166 (1%)
Frame = +1
Query: 442 ALKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMACMLED--RQIVACAPTGSGKT 615
++K F +L ++ P+ L+ + + +P+ +Q +A+ +L + R ++ + +G+GKT
Sbjct: 112 SVKSFEELELK---PE-LLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKT 167
Query: 616 AAFIVPLLHTLGTHQGGPRGLILCPTRELAHQIYREALRLSASTQLRVTVVKNLKESKVK 795
AAF + +L + P+ + L P+RELA QI + T+++ +K+S K
Sbjct: 168 AAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAF--GIKDSVPK 225
Query: 796 EREATFRKSDIVISTPNRLCYLLNQDQVNISLXKVRWLIIDEXDKL 933
+ + IVI TP + L+ + Q++ KV ++DE D +
Sbjct: 226 GAKI---DAQIVIGTPGTVMDLMKRRQLDARDIKV--FVLDEADNM 266
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 59.3 bits (137), Expect = 1e-09
Identities = 50/182 (27%), Positives = 92/182 (50%), Gaps = 16/182 (8%)
Frame = +1
Query: 436 PPALKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQ----------IV 585
P +FS L N+ LV+ + + + VQ + +L+D + +
Sbjct: 122 PNTTVEFSSL----NISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVC 177
Query: 586 ACAPTGSGKTAAFIVPLLHTLGTHQGGP--RGLILCPTRELAHQIYREALRLSASTQLRV 759
A TGSGKT ++++P++ L +H+ P R +++ PTREL Q+ + + L+V
Sbjct: 178 VSAATGSGKTLSYVIPIVQCL-SHRTVPRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQV 236
Query: 760 ---TVVKNLK-ESKVKEREATFRKSDIVISTPNRLCYLLNQDQVNISLXKVRWLIIDEXD 927
T K+L+ E+ + + D+++STP RL + D+ + SL +R+++IDE D
Sbjct: 237 CAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDE-SFSLQHLRYMVIDEAD 295
Query: 928 KL 933
+L
Sbjct: 296 RL 297
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 32.3 bits (70), Expect = 0.14
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 2/134 (1%)
Frame = +1
Query: 526 EPTPVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGTHQGGPRGLILCPTRELA 705
+P QR+ + + D + APT SGKT + L + G + + PT+ L
Sbjct: 735 DPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGV-VIYVAPTKALV 793
Query: 706 HQIYREA-LRLSASTQLRVTVVKNLKESKVKEREATFRKSDIVISTPNRLCYLLNQDQV- 879
+Q+ E R + V ++ + T ++I+ P+ L +L Q +
Sbjct: 794 NQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPT--NCQVLITVPHVLQSMLLQPALA 851
Query: 880 NISLXKVRWLIIDE 921
N K+R +I DE
Sbjct: 852 NAWCPKIRRIIFDE 865
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 32.3 bits (70), Expect = 0.14
Identities = 27/125 (21%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Frame = +1
Query: 571 DRQIVACAPTGSGKTAAFIVPLLHTLGTHQGGP--------RGLILCPTRELAHQIYREA 726
D I+ CAPTG+GKT ++ +L+ L H + + + P + L ++
Sbjct: 535 DENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNF 594
Query: 727 LRLSASTQLRVTVVKNLKESKVKEREATFRKSDIVISTPNRLCYLLNQDQVNISLXKVRW 906
+ +RV + +S++ +++ + ++ I+++TP + + + + VR
Sbjct: 595 SKRLTPYNIRVAELTG--DSQLTKQQIS--ETQIIVTTPEKWDIITRKANDLSYVNLVRL 650
Query: 907 LIIDE 921
+IIDE
Sbjct: 651 VIIDE 655
Score = 30.7 bits (66), Expect = 0.43
Identities = 29/114 (25%), Positives = 48/114 (42%)
Frame = +1
Query: 592 APTGSGKTAAFIVPLLHTLGTHQGGPRGLILCPTRELAHQIYREALRLSASTQLRVTVVK 771
AP GSGKT + LLH G + + P +E+ + Y E + +VK
Sbjct: 1387 APNGSGKTVCAELALLHHWSQEDYG-TAVYIAPIQEIVDRRYEEWYGKFSDLGDGKVLVK 1445
Query: 772 NLKESKVKEREATFRKSDIVISTPNRLCYLLNQDQVNISLXKVRWLIIDEXDKL 933
E + + +D++ TP++ L + + S+ KV + I DE L
Sbjct: 1446 LTGER--SQDLKLIQVADLIFCTPSQWDSLSKRWRSMRSIQKVDFYICDELQLL 1497
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 31.5 bits (68), Expect = 0.24
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +1
Query: 535 PVQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGTHQGGPRGLILCPTRELAHQI 714
P Q ++AC+ ++ A T +GKT + +L Q R + P + L++Q
Sbjct: 201 PFQAVSIACIERQESVLVSAHTSAGKTVVAEYAVAQSLRDKQ---RVIYTSPIKALSNQK 257
Query: 715 YREAL 729
YRE L
Sbjct: 258 YRELL 262
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 31.5 bits (68), Expect = 0.24
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Frame = +1
Query: 580 IVACAPTGSGKTAAFIVPLLHTLGTHQGGPRGLILCPTRELAHQIYREALR-LSASTQLR 756
++ T SGK+ + +P+L +L + PT+ LA + + LS L+
Sbjct: 329 VIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLAQDQKKSLIDILSYMPTLK 387
Query: 757 VTVVKNLK-ESKVKEREATFRKSDIVISTPNRL--CYLLNQDQVNISLXKVRWLIIDE 921
V ++ ++ RE+ R ++I+ + P+ L L N ++ ++ ++DE
Sbjct: 388 NIRVDTFDGDTPLESRESIIRSANIIFTNPDMLHQTILPNANRWYYFFKNLKLFVLDE 445
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 29.5 bits (63), Expect = 0.98
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 571 DRQIVACAPTGSGKTAAFIVPLLHTLGTH 657
+ ++ CAPTG+GKT ++ +L T+ +
Sbjct: 293 NENMLICAPTGAGKTDVALLAMLQTISNY 321
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = -1
Query: 598 SERTPLFDG---PPTCKPWLAVELEWVHCIHTG*LY 500
S PLF P T PW + L WV C+ G LY
Sbjct: 140 SGSAPLFGNFLEPLTKTPWYMIPLIWVPCVTYGFLY 175
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 27.9 bits (59), Expect = 3.0
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +1
Query: 430 HIPPALKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVACAPTGSG 609
H+ +D L +PQ D S+ + +++ + LE R ++ C P+G G
Sbjct: 60 HLNNLKEDRFQLWFEKYIPQKAADLAVH--KSKISAIKQWMLTDSLESRLLLICGPSGCG 117
Query: 610 KTAA 621
K+ A
Sbjct: 118 KSTA 121
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.1 bits (57), Expect = 5.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 562 MLEDRQIVACAPTGSGKTAAFIVPLL 639
+L ++ PTG GK+ +F++P L
Sbjct: 1203 LLNRMNLITVLPTGGGKSLSFLIPAL 1228
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 5.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 562 MLEDRQIVACAPTGSGKTAAFIVPLL 639
+L ++ PTG GK+ +F++P L
Sbjct: 1203 LLNRMNLITVLPTGGGKSLSFLIPAL 1228
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 538 VQRQAMACMLEDRQIVACAPTGSGKTAAFIVPLLHTLGTHQGGPRG 675
V+ Q ++ + +++ ++ TGSGKT + L+ G H+ G G
Sbjct: 497 VREQLLSVIRDNQVLIVVGETGSGKTTQ-LAQFLYEDGYHRNGMIG 541
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,405,111
Number of Sequences: 5004
Number of extensions: 61441
Number of successful extensions: 211
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 657420060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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