Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B14
         (1216 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       96   5e-22
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   5.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   7.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 96.3 bits (229), Expect = 5e-22
 Identities = 59/183 (32%), Positives = 106/183 (57%), Gaps = 9/183 (4%)
 Frame = +1

Query: 412 IKAVGRHIPPALKDFSDLTVRYNVPQALVDTVTQCGYSEPTPVQRQAMACMLEDRQIVAC 591
           +   G ++P  ++ F    +R N+   ++D + + GY +PTPVQ+ A+  ++  R ++AC
Sbjct: 184 VNVSGDNVPQPIESFEAAGLR-NI---VLDNIKKSGYKKPTPVQKHALPIIMNGRDLMAC 239

Query: 592 APTGSGKTAAFIVPLLHTL---------GTHQGGPRGLILCPTRELAHQIYREALRLSAS 744
           A TGSGKTAAF VP+++TL          +    P+ +I+ PTREL  QI+++ ++ S +
Sbjct: 240 AQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLN 299

Query: 745 TQLRVTVVKNLKESKVKEREATFRKSDIVISTPNRLCYLLNQDQVNISLXKVRWLIIDEX 924
           + L+ TVV     S + +R        I+++TP RL   + + +V  S   V++L++DE 
Sbjct: 300 SILK-TVVAYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFS--SVQFLVLDEA 356

Query: 925 DKL 933
           D++
Sbjct: 357 DRM 359


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 532 TPVQRQAMACMLEDRQIVACAPTGS 606
           TP +R    C  +D  I+   P G+
Sbjct: 203 TPTERLEALCWTQDEDIICSTPIGN 227


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = +1

Query: 532 TPVQRQAMACMLEDRQIVACAPTGS 606
           TP +R    C  +D  ++   P G+
Sbjct: 150 TPTERLEALCWTQDEDVICSTPIGN 174


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 640 HTLGTHQGGPRGLILCPTRELAHQIYREALRLSAS 744
           HT+G   G P       T+ L H  YR+   LS S
Sbjct: 341 HTMGPTMGPPHHHHHHQTQSLQHLHYRQPPTLSES 375


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,004
Number of Sequences: 438
Number of extensions: 4614
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41572845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)