Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B13
         (1296 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0218 + 18219956-18220555                                         33   0.49 
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   2.6  
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989...    29   6.1  
12_01_0816 + 7502669-7503145                                           29   8.0  

>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 33.1 bits (72), Expect = 0.49
 Identities = 22/63 (34%), Positives = 27/63 (42%)
 Frame = -1

Query: 786 NGGFVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 607
           NGG     ++ A    +T  P     R R   R E  G  + KR+GR R    G  RGKR
Sbjct: 81  NGGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKR 136

Query: 606 LVS 598
             S
Sbjct: 137 RAS 139


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 506 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 664
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>12_02_1052 -
           25698263-25698394,25698587-25698679,25698945-25698995,
           25699074-25699258,25699361-25699407,25699704-25699918
          Length = 240

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -3

Query: 847 SCLTGXTQDD--SYRIRRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKA-PRFPK 686
           +C T  T     S R  R+  + R  R  S  W+ RP+    T S+S  +  PRFP+
Sbjct: 40  ACCTAATSSTRRSRRPMRASASSRRRRTPSSTWTPRPSRYGGTPSISTSRGQPRFPR 96


>12_01_0816 + 7502669-7503145
          Length = 158

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 805 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 674
           R SG  +R V    PAW ER   + ++ +V  E+A      ERR
Sbjct: 8   RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,070,902
Number of Sequences: 37544
Number of extensions: 632696
Number of successful extensions: 1873
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1873
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4038959244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)