Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B12
         (1211 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   138   1e-33
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    30   0.74 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   1.3  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    28   2.3  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    28   3.0  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    27   6.9  
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    27   6.9  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  138 bits (334), Expect = 1e-33
 Identities = 65/104 (62%), Positives = 81/104 (77%)
 Frame = +3

Query: 555 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 734
           R+A YN KKA KP  + KS + LDVKPWDDET M  LE+AVRSI  DGL+WG +KLVP+ 
Sbjct: 111 RVAEYNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVG 170

Query: 735 YGIHKLQISCVVEDDKVSIDWLTEEIEKNEDYVQSVDIAAFNKV 866
           +G++K QI+ VVEDDKVS++ L EE+E  EDYVQS DIAA +K+
Sbjct: 171 FGVNKFQINLVVEDDKVSLEALQEELEGFEDYVQSTDIAAMSKL 214


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 96  NLIVXTNVFIVFKXNSNLNFGIISMAALLHEXVWLDRNVYNDAEKAYYESLSKM 257
           +LI+ T    + + N+N   G+IS A  L   V+L++ ++N    A  E L K+
Sbjct: 199 DLIIITQS--IMQNNANNGTGVISRAKFLEFYVFLEQLIFNKLSFASVEQLEKL 250


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 291 TELSTKVISLENENKDLKKAIDDLRN 368
           T+  +K+ S E ENK LK +ID+ +N
Sbjct: 388 TDAESKLSSFEQENKSLKGSIDEYQN 413


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +3

Query: 195 WLDRNVYNDAEKAYYESLSKMDSVATLAGVP-NTELSTKVISLENENKDLKKAIDDLRNL 371
           +++ N+ N+ +K   ESL K         +  NT+LS K+   ENE +DL +    L++ 
Sbjct: 5   FINSNINNE-DKLPMESLKKKFLKQNREIIKINTQLSIKIRESENEIQDLIQENFTLKSY 63

Query: 372 VISLQVR 392
           ++ L+ R
Sbjct: 64  LVKLEAR 70


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +3

Query: 240 ESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLE 407
           E  + M ++  ++G   T + +    +E+ENK L   + D+RN V  L+  +   E
Sbjct: 242 ERTAAMQAIDDISGTIET-IKSDCYKVESENKGLINEVMDMRNFVQQLEQELYAFE 296


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 632 LYIQNNIRLCN*HWLFSFLCIICSKTLFLYLSCFS 528
           LY+Q +       W+F    + C+ +LF   +CFS
Sbjct: 210 LYLQGDPERVKKAWVFQSRLLFCTASLFEKTACFS 244


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +3

Query: 198 LDRNVYNDAEKAYYESLSKMDSVATLAGVPNTELSTKVISLENENKDLKKAIDDLRNLVI 377
           +DR V +  +  YYESL K   +A      N +L   +I      + ++    D R + +
Sbjct: 471 VDREVEDQDDLDYYESLDKKSKMAKKLRKENHDLERDLIRASRHPELIELGEGDKRGITL 530

Query: 378 SL 383
            +
Sbjct: 531 DI 532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,486,156
Number of Sequences: 5004
Number of extensions: 58506
Number of successful extensions: 176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 655427878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)