Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_B12
(1211 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 118 1e-26
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 118 1e-26
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 114 2e-25
08_01_0778 + 7548307-7549220,7551682-7552021 29 5.6
06_03_0860 + 25484826-25485758,25486155-25486406 29 5.6
07_01_0243 - 1783903-1784658 29 7.4
05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449 29 7.4
04_04_1097 - 30859963-30860302,30862130-30863058 29 9.7
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 118 bits (283), Expect = 1e-26
Identities = 59/107 (55%), Positives = 74/107 (69%), Gaps = 3/107 (2%)
Frame = +3
Query: 555 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 734
R AA A KK KS+++LDVKPWDDETDM LE+AVR++ +GLLWGA+KLVP+
Sbjct: 125 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVG 182
Query: 735 YGIHKLQISCVVEDDKVSIDWLTEE---IEKNEDYVQSVDIAAFNKV 866
YGI KLQI + DD VS+D L E+ E +Y+QS DI AFNK+
Sbjct: 183 YGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 118 bits (283), Expect = 1e-26
Identities = 59/107 (55%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Frame = +3
Query: 555 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 734
R AA A KK KS+++LDVKPWDDETDMA LE+AVR++ +GLLWGA+KLVP+
Sbjct: 141 RAAAVKASGKKKES--GKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVG 198
Query: 735 YGIHKLQISCVVEDDKVSIDWLTEE---IEKNEDYVQSVDIAAFNKV 866
YGI KLQI + DD VS+D L E+ E +++QS DI AFNK+
Sbjct: 199 YGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 245
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 114 bits (274), Expect = 2e-25
Identities = 56/101 (55%), Positives = 71/101 (70%), Gaps = 3/101 (2%)
Frame = +3
Query: 573 AKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLAYGIHKL 752
+K + K KS+++LDVKPWDDETDM LE+AVRS+ +GL WGA+KLVP+ YGI KL
Sbjct: 124 SKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKL 183
Query: 753 QISCVVEDDKVSIDWLTEE---IEKNEDYVQSVDIAAFNKV 866
QI + DD VS+D L EE E ++VQS DI AFNK+
Sbjct: 184 QIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224
>08_01_0778 + 7548307-7549220,7551682-7552021
Length = 417
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 678 RSISTDGLLWGAAKLVPLA-YGIHKLQISCV-VEDDKVSIDWLTEEIEKNEDYVQSVDIA 851
R + +D LL K + +A +G+ ++++ + + + W+ E+ ++ Y Q VD+
Sbjct: 261 RDLKSDNLLISGDKSIKIADFGVARIEVKTEGMTPETGTYRWMAPEVIQHRPYDQKVDVY 320
Query: 852 AFNKV 866
+F V
Sbjct: 321 SFGIV 325
>06_03_0860 + 25484826-25485758,25486155-25486406
Length = 394
Score = 29.5 bits (63), Expect = 5.6
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 678 RSISTDGLLWGAAKLVPLA-YGIHKLQISC-VVEDDKVSIDWLTEEIEKNEDYVQSVDIA 851
R + + LL V +A +G L+ +C + +K + W+ E+ K + Y + VD+
Sbjct: 221 RDLKSQNLLLNDEMRVKVADFGTSCLETACQATKGNKGTYRWMAPEMTKEKPYTRKVDVY 280
Query: 852 AFNKV 866
+F V
Sbjct: 281 SFGIV 285
>07_01_0243 - 1783903-1784658
Length = 251
Score = 29.1 bits (62), Expect = 7.4
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +1
Query: 379 ACKSVLKPWNHPAVSPLIVFNQKNLQQLLLIRMTKMMMLI 498
+C S++ P P + PL+ +Q +L++LLL + MM+L+
Sbjct: 59 SCPSLVPP---PRLLPLVPLHQSHLRRLLLSLTSSMMVLV 95
>05_06_0099 + 25572530-25573603,25574178-25574633,25575165-25575449
Length = 604
Score = 29.1 bits (62), Expect = 7.4
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +3
Query: 678 RSISTDGLLW-GAAKLVPLAYGIHKLQISC-VVEDDKVSIDWLTEEIEKNEDYVQSVDIA 851
R + + +L+ G + +G+ ++ C +EDD + W+ E+ K + Y + VD+
Sbjct: 420 RDVKPENILFDGECCAKVVDFGVACEEVYCNSLEDDPGTYRWMAPEMYKRKPYGRKVDVY 479
Query: 852 AFNKV 866
+F V
Sbjct: 480 SFGLV 484
>04_04_1097 - 30859963-30860302,30862130-30863058
Length = 422
Score = 28.7 bits (61), Expect = 9.7
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 678 RSISTDGLLWGAAKLVPLA-YGIHKLQISCV-VEDDKVSIDWLTEEIEKNEDYVQSVDIA 851
R + +D LL K + +A +G+ ++++ + + + W+ E+ ++ Y Q VD+
Sbjct: 266 RDLKSDNLLISGDKSIKIADFGVARIEVKTEGMTPETGTYRWMAPEMIQHRPYDQKVDVY 325
Query: 852 AFNKV 866
+F V
Sbjct: 326 SFGIV 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,823,560
Number of Sequences: 37544
Number of extensions: 398456
Number of successful extensions: 930
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3713048988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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