Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B12
         (1211 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical p...   149   5e-36
L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...   140   2e-33
AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    31   1.6  

>Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical
           protein Y41E3.10a protein.
          Length = 263

 Score =  149 bits (360), Expect = 5e-36
 Identities = 89/194 (45%), Positives = 109/194 (56%), Gaps = 1/194 (0%)
 Frame = +3

Query: 288 NTELSTKVISLENENKDLKKAIDDLRNLVISLQVRVETLEXXXXXXXXXXXXEKPAAAST 467
           N E    V  L  E+  L K +DDL +LV  LQ+++ TL               PAAA  
Sbjct: 72  NKEGGEDVSKLREEHSALAKKVDDLASLVAELQLQLSTLRQGQTSSVAAPAAA-PAAAKE 130

Query: 468 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAAYNAKKAKKPVLIAKSNIILDVKPWDDE 647
                                        RLAAY AKKA K   IAKS++ILDVKPWDDE
Sbjct: 131 EAAGDDDFDLFGSEDEEEDEEKKKVVEE-RLAAYAAKKATKAGPIAKSSVILDVKPWDDE 189

Query: 648 TDMAALEQAVRSISTDGLLWGAAKLVPLAYGIHKLQISCVVEDDKVSIDWLTEEIEKN-E 824
           TD+  +E+ VRSI  DGL+WG AKL+P+ YGI KLQI  V+ED KVS+D L E+I  + E
Sbjct: 190 TDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEKITGDFE 249

Query: 825 DYVQSVDIAAFNKV 866
           D+VQSVDI AFNK+
Sbjct: 250 DHVQSVDIVAFNKI 263


>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score =  140 bits (338), Expect = 2e-33
 Identities = 69/105 (65%), Positives = 83/105 (79%), Gaps = 1/105 (0%)
 Frame = +3

Query: 555 RLAAYNAKKAKKPVLIAKSNIILDVKPWDDETDMAALEQAVRSISTDGLLWGAAKLVPLA 734
           RLAAY  KKAKK   IAKS++ILDVKPWDDETD+  +E+ VRSI  DGL+WG AKL+P+ 
Sbjct: 109 RLAAYAEKKAKKAGPIAKSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIG 168

Query: 735 YGIHKLQISCVVEDDKVSIDWLTEEIEKN-EDYVQSVDIAAFNKV 866
           YGI KLQI  V+ED KVS+D L E+I  + ED+VQSVDI AFNK+
Sbjct: 169 YGIKKLQIITVIEDLKVSVDDLIEKITGDFEDHVQSVDIVAFNKI 213


>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +3

Query: 708 GAAKLVPLAYG-IHKLQISCVVE-DDKVSIDWLTEEIEKNEDY 830
           G  K  P A G I +  +SC+ E DD V  +WL E IE+ EDY
Sbjct: 288 GLKKYAPGALGPILETLLSCMTEMDDDVLNEWLNE-IEEEEDY 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,853,558
Number of Sequences: 27780
Number of extensions: 351986
Number of successful extensions: 1002
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3339026560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)