Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_B10
(1285 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 41 0.002
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 41 0.002
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 41 0.002
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 33 0.44
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 33 0.44
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.4
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 5.4
AC006611-4|AAK85456.2| 328|Caenorhabditis elegans Hypothetical ... 29 5.4
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 9.4
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 40.7 bits (91), Expect = 0.002
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = -3
Query: 641 PPPXXKKXFXPPXXXKPPXPPPPXXXXXPXXXXXXXGXXKKXPXXPPGXGFF 486
PPP PP PP PPPP P G K P PP G F
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793
Score = 31.9 bits (69), Expect = 1.0
Identities = 18/55 (32%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Frame = -3
Query: 641 PPPXXKKXFXPPXXXKPPXPPP----PXXXXXPXXXXXXXGXXKKXPXXPPGXGF 489
PPP PP PP PPP P P G P PP GF
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 780
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 40.7 bits (91), Expect = 0.002
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = -3
Query: 641 PPPXXKKXFXPPXXXKPPXPPPPXXXXXPXXXXXXXGXXKKXPXXPPGXGFF 486
PPP PP PP PPPP P G K P PP G F
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 793
Score = 31.9 bits (69), Expect = 1.0
Identities = 18/55 (32%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Frame = -3
Query: 641 PPPXXKKXFXPPXXXKPPXPPP----PXXXXXPXXXXXXXGXXKKXPXXPPGXGF 489
PPP PP PP PPP P P G P PP GF
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 780
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 40.7 bits (91), Expect = 0.002
Identities = 19/52 (36%), Positives = 19/52 (36%)
Frame = -3
Query: 641 PPPXXKKXFXPPXXXKPPXPPPPXXXXXPXXXXXXXGXXKKXPXXPPGXGFF 486
PPP PP PP PPPP P G K P PP G F
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMF 376
Score = 31.9 bits (69), Expect = 1.0
Identities = 18/55 (32%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Frame = -3
Query: 641 PPPXXKKXFXPPXXXKPPXPPP----PXXXXXPXXXXXXXGXXKKXPXXPPGXGF 489
PPP PP PP PPP P P G P PP GF
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 363
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 33.1 bits (72), Expect = 0.44
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 641 PPPXXKKXFXPPXXXKPPXPPPPXXXXXP 555
PPP F PP PP PPPP P
Sbjct: 47 PPPICPPQFCPPPPMCPPPPPPPPPPMCP 75
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 33.1 bits (72), Expect = 0.44
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 641 PPPXXKKXFXPPXXXKPPXPPPPXXXXXP 555
PPP F PP PP PPPP P
Sbjct: 56 PPPPCPAQFCPPPPICPPPPPPPMPCPPP 84
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 1.3
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = -1
Query: 640 PPXXXKXPXPPXXXKNPXXPPPXXXXXPPXXXXXXXXPXKKXPXPPP 500
PP P PP P PPP PP P P PPP
Sbjct: 257 PPPAAGSPPPPRTGSPP--PPPTGSPPPPPAGGSPPPPRAGSPPPPP 301
Score = 30.3 bits (65), Expect = 3.1
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = -1
Query: 640 PPXXXKXPXPPXXXKNPXXPPPXXXXXPPXXXXXXXXPXKKXPXPPP 500
PP PP PPP PP P P PPP
Sbjct: 238 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 284
Score = 28.7 bits (61), Expect = 9.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -3
Query: 641 PPPXXKKXFXPPXXXKPPXPPPP 573
PPP PP PP PPPP
Sbjct: 281 PPPPAGGSPPPPRAGSPPPPPPP 303
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 1.3
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = -1
Query: 640 PPXXXKXPXPPXXXKNPXXPPPXXXXXPPXXXXXXXXPXKKXPXPPP 500
PP P PP P PPP PP P P PPP
Sbjct: 278 PPPAAGSPPPPRTGSPP--PPPTGSPPPPPAGGSPPPPRAGSPPPPP 322
Score = 30.3 bits (65), Expect = 3.1
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = -1
Query: 640 PPXXXKXPXPPXXXKNPXXPPPXXXXXPPXXXXXXXXPXKKXPXPPP 500
PP PP PPP PP P P PPP
Sbjct: 259 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 305
Score = 28.7 bits (61), Expect = 9.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -3
Query: 641 PPPXXKKXFXPPXXXKPPXPPPP 573
PPP PP PP PPPP
Sbjct: 302 PPPPAGGSPPPPRAGSPPPPPPP 324
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 1.3
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = -1
Query: 640 PPXXXKXPXPPXXXKNPXXPPPXXXXXPPXXXXXXXXPXKKXPXPPP 500
PP P PP P PPP PP P P PPP
Sbjct: 263 PPPAAGSPPPPRTGSPP--PPPTGSPPPPPAGGSPPPPRAGSPPPPP 307
Score = 30.3 bits (65), Expect = 3.1
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = -1
Query: 640 PPXXXKXPXPPXXXKNPXXPPPXXXXXPPXXXXXXXXPXKKXPXPPP 500
PP PP PPP PP P P PPP
Sbjct: 244 PPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPP 290
Score = 28.7 bits (61), Expect = 9.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -3
Query: 641 PPPXXKKXFXPPXXXKPPXPPPP 573
PPP PP PP PPPP
Sbjct: 287 PPPPAGGSPPPPRAGSPPPPPPP 309
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 5.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -3
Query: 641 PPPXXKKXFXPPXXXKPPXPPPP 573
PPP F PP P PPPP
Sbjct: 317 PPPPPPSRFGPPGMGGMPPPPPP 339
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 5.4
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -3
Query: 641 PPPXXKKXFXPPXXXKPPXPPPP 573
PPP F PP P PPPP
Sbjct: 327 PPPPPPSRFGPPGMGGMPPPPPP 349
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 5.4
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = -1
Query: 640 PPXXXKXPXPPXXXKNPXXPPPXXXXXPPXXXXXXXXPXKKXPXPPPXXVF 488
PP P PP P PPP PP P PPP +F
Sbjct: 1338 PPPPPPPPPPPSDDLTPVPPPP-----PPPPTMSKAPTGVPLPVPPPPPLF 1383
>AC006611-4|AAK85456.2| 328|Caenorhabditis elegans Hypothetical
protein C30F8.3 protein.
Length = 328
Score = 29.5 bits (63), Expect = 5.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 656 IFSXXPPPXXKKXFXPPXXXKPPXPPPP 573
++S PP F P +PP PPPP
Sbjct: 52 LYSAPVPPPPAYPFAPQVFTQPPPPPPP 79
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 28.7 bits (61), Expect = 9.4
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = -1
Query: 637 PXXXKXPXPPXXXKNPXXPPPXXXXXPPXXXXXXXXPXKKXPXPPP 500
P P P K+P PPP PP P P PPP
Sbjct: 481 PNPSPSPQPAEVSKSPPPPPPL----PPIATPSSVPPPPPPPPPPP 522
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,337,496
Number of Sequences: 27780
Number of extensions: 200394
Number of successful extensions: 2156
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3589453552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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