Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_B09
(1234 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy... 175 1e-44
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 71 3e-13
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 65 2e-11
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 48 2e-06
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 41 3e-04
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 41 4e-04
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 40 7e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.76
>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 194
Score = 175 bits (425), Expect = 1e-44
Identities = 85/190 (44%), Positives = 120/190 (63%), Gaps = 1/190 (0%)
Frame = +1
Query: 166 LQCLLGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYI 345
++ LL +Q DFV+ A+ S I ++K D++K ++ +M G++GDT FAEYI
Sbjct: 1 MESLLAVQGQDFVLTASSSSAVRGITVLKPDDDKSQILNSHNLMLYCGEAGDTTNFAEYI 60
Query: 346 AKNIQLYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENG-PELYFMD 522
A NI LY +R+ L P A ASFTR+ LA LRS PY VN+L+ GY+ G PEL+++D
Sbjct: 61 AANISLYTLRHNLNLSPEATASFTRKQLATSLRSRKPYQVNILLAGYETNLGKPELFWLD 120
Query: 523 YLASSVKVPFAAHGYGGYLSLSIMDRYHKKDATETEAYDILKKCVQEVHKRLFVSLPNFQ 702
YLA+ V+VP+A GY + LSI DRY+K D T EA I+K C E+ KR+ + F
Sbjct: 121 YLATCVRVPYACQGYSSFYCLSIFDRYYKPDLTIDEAVRIMKLCFDELKKRMPIDFKGFI 180
Query: 703 VTVVNRDGIK 732
VV++DGI+
Sbjct: 181 CKVVDKDGIR 190
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 70.9 bits (166), Expect = 3e-13
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 6/192 (3%)
Frame = +1
Query: 175 LLGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAK- 351
+L ++ D VMIAAD S+ + D E++ K+ D ++G GD D Q + K
Sbjct: 46 VLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQIQRLLEKL 105
Query: 352 NIQLYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKEN-GPELYFMDYL 528
I+ +GY L PS + + L PY+ +++ G D EN P + F D
Sbjct: 106 EIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAFADLR 165
Query: 529 ASSVKVPFAAHGYGGYLSLSIMDRYHKKDATETEAYDILKKCVQEVHKRLFV----SLPN 696
++ P A G+ +L+L ++ + D +T + + + + E + LF SL
Sbjct: 166 GTTYSAPAIATGFAMHLALPMLRKATDDDRWKTLSKESARATIDECMRVLFYRDARSLNK 225
Query: 697 FQVTVVNRDGIK 732
F V + +GI+
Sbjct: 226 FSVATITPEGIE 237
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 64.9 bits (151), Expect = 2e-11
Identities = 39/162 (24%), Positives = 81/162 (50%)
Frame = +1
Query: 175 LLGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKN 354
++G+ D +++ AD + +I + +K++ IS + G + DT I+ N
Sbjct: 38 IVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISSN 97
Query: 355 IQLYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLAS 534
I+L+ + + A + +++L Y Y V +GGYD + GP L+ + S
Sbjct: 98 IELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYLV---LGGYDCK-GPHLFTIAAHGS 153
Query: 535 SVKVPFAAHGYGGYLSLSIMDRYHKKDATETEAYDILKKCVQ 660
S K+P+ A G G ++S+++ ++ D EA +++K+ ++
Sbjct: 154 SDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIE 195
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 48.4 bits (110), Expect = 2e-06
Identities = 30/119 (25%), Positives = 54/119 (45%)
Frame = +1
Query: 178 LGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNI 357
+ I + F ++A D + + I + +++++ D LV+G G D + I + I
Sbjct: 17 VAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQRI 76
Query: 358 QLYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLAS 534
LY + ++ + A R L Y + PY+V + G DKE E+Y D + S
Sbjct: 77 DLYHDNHERKMSAQSCACMVRTLL--YGKRFFPYYVYTTVAGIDKEGKGEIYSFDPVGS 133
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 41.1 bits (92), Expect = 3e-04
Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 8/191 (4%)
Frame = +1
Query: 178 LGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNI 357
+G++ D V++ ++ + +M EK+++I + + G + D E+
Sbjct: 38 IGVKTKDAVVLGVEKRLTSPLM-ESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQT 96
Query: 358 Q----LYKMRNGYELGPSA----AASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELY 513
Q Y G E + A F E S P+ V +L+ G D E+GP+LY
Sbjct: 97 QNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGID-EHGPQLY 155
Query: 514 FMDYLASSVKVPFAAHGYGGYLSLSIMDRYHKKDATETEAYDILKKCVQEVHKRLFVSLP 693
+ + + A G G + S + + KD T EA ++ K +++V + S
Sbjct: 156 HSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVLILKVLRQVMEEKLDS-K 214
Query: 694 NFQVTVVNRDG 726
N Q+ V +G
Sbjct: 215 NVQLAKVTAEG 225
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 40.7 bits (91), Expect = 4e-04
Identities = 40/190 (21%), Positives = 79/190 (41%), Gaps = 5/190 (2%)
Frame = +1
Query: 178 LGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNI 357
LGI D +++AA++ + ++ ++ EK+Y I D ++ V G + D N Y +
Sbjct: 35 LGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVG 94
Query: 358 QLYKMRNGYELGPSAAASFT---RRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYL 528
Q Y E+ ++ +Y P+ V+ L G+D G +L+ +
Sbjct: 95 QQYLQTFNEEMPCEQLVRRVCDLKQGYTQY-GGLRPFGVSFLYAGWDHIRGYQLFQSN-- 151
Query: 529 ASSVKVPFAAHGYGGYLS--LSIMDRYHKKDATETEAYDILKKCVQEVHKRLFVSLPNFQ 702
S + A+ GG + S+M + +K D EA + K + + ++ +
Sbjct: 152 PSGNYGSWQANSIGGNSTSVQSLMRQEYKDDINLDEASAMAVKFLSKTLDSNSLTHEKIE 211
Query: 703 VTVVNRDGIK 732
+ +D K
Sbjct: 212 FATITKDTTK 221
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 39.9 bits (89), Expect = 7e-04
Identities = 31/152 (20%), Positives = 69/152 (45%)
Frame = +1
Query: 202 VMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQLYKMRNG 381
+++ D S +I +K+ +I+ L+ + G + D + + +L+++RN
Sbjct: 73 IVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRN- 131
Query: 382 YELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSVKVPFAAH 561
EL +AAS N+ Y + ++ G K G LY++D + +K +
Sbjct: 132 KELISVSAASKILSNIT-YSYKGYGLSMGTMLAGTGK-GGTALYYIDSDGTRLKGDLFSV 189
Query: 562 GYGGYLSLSIMDRYHKKDATETEAYDILKKCV 657
G G + ++D ++ D ++ EA + ++ +
Sbjct: 190 GSGSTFAYGVLDSGYRWDLSKQEALYLAQRSI 221
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.76
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -1
Query: 1153 PXPGGGXXXXXXXPPPPPPGXXKK 1082
P P G PPPPPPG KK
Sbjct: 12 PPPPPGFEPPSQPPPPPPPGYVKK 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,578,136
Number of Sequences: 5004
Number of extensions: 68105
Number of successful extensions: 230
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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