Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_B09
(1234 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80442-1|AAB37663.1| 202|Caenorhabditis elegans Proteasome beta... 153 2e-37
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 63 3e-10
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 60 3e-09
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 51 1e-06
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 51 1e-06
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 49 6e-06
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 39 0.008
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 38 0.011
Z77668-3|CAI46576.1| 284|Caenorhabditis elegans Hypothetical pr... 32 0.96
Z77655-9|CAI46567.1| 284|Caenorhabditis elegans Hypothetical pr... 32 0.96
AC006603-1|AAF39749.1| 772|Caenorhabditis elegans Hypothetical ... 31 2.2
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 5.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 5.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 5.1
Z54270-8|CAA91029.2| 301|Caenorhabditis elegans Hypothetical pr... 29 8.9
>U80442-1|AAB37663.1| 202|Caenorhabditis elegans Proteasome beta
subunit protein 4 protein.
Length = 202
Score = 153 bits (372), Expect = 2e-37
Identities = 76/194 (39%), Positives = 122/194 (62%), Gaps = 3/194 (1%)
Frame = +1
Query: 175 LLGIQCNDFVMIAADQSNSHSIMIMKDDE-EKIYKISDRLVMGVIGDSGDTNQFAEYIAK 351
L+GI ++V++AAD++ I+ D E +K Y++ +L M IG+ GD QF ++ +
Sbjct: 7 LVGISTENYVILAADKATFAYGAILADSENDKEYRLGKKLTMMCIGEEGDVAQFGDWTKR 66
Query: 352 NIQLYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGY-DKENGPELYFMDYL 528
N+QLY +RNGYE+ PS A F RR++AE LRS Y V+VL+GGY DKE+ L +DYL
Sbjct: 67 NLQLYSVRNGYEVSPSCAHHFVRRSIAEGLRSQDHYTVDVLIGGYDDKEDKAFLGSVDYL 126
Query: 529 ASSV-KVPFAAHGYGGYLSLSIMDRYHKKDATETEAYDILKKCVQEVHKRLFVSLPNFQV 705
A+ + + P+ G+ G +IMDR +KKD TE E ++ KC+ E +R ++P ++V
Sbjct: 127 ANGLGQQPYLFRGFCGRFCYAIMDREYKKDMTEAEGLALMNKCIGEAKRRFVANIPGYKV 186
Query: 706 TVVNRDGIKVLPTI 747
++++ G + L +
Sbjct: 187 VIIDKKGYRKLDDV 200
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 63.3 bits (147), Expect = 3e-10
Identities = 37/153 (24%), Positives = 78/153 (50%)
Frame = +1
Query: 202 VMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQLYKMRNG 381
+++ AD + +I EK++K+++ + G + D +Q + ++ N++L ++ G
Sbjct: 58 LVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTKMLSGNLRLLELNTG 117
Query: 382 YELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSVKVPFAAH 561
+ A +++L Y Y +L+GG D GP LY +++ PF A
Sbjct: 118 RKARVITALRQAKQHLFNYQGYIGAY---LLIGGVDP-TGPHLYMCSANGTTMAFPFTAQ 173
Query: 562 GYGGYLSLSIMDRYHKKDATETEAYDILKKCVQ 660
G G Y +++I++R K D T+ EA ++++ ++
Sbjct: 174 GSGSYAAITILERDFKVDMTKDEAEKLVQRALE 206
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 60.1 bits (139), Expect = 3e-09
Identities = 38/144 (26%), Positives = 66/144 (45%)
Frame = +1
Query: 202 VMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQLYKMRNG 381
+++A D S I KI I DR+V + G + D + +AK LY++R
Sbjct: 83 IIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREK 142
Query: 382 YELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSVKVPFAAH 561
+ SAA+ + L Y V ++ GYDK+ GP+++ +D ++ +
Sbjct: 143 TSITVSAASKYFANTLYGYRGQGLS--VGSMVAGYDKK-GPQIFKVDSEGDRCQLKVCSV 199
Query: 562 GYGGYLSLSIMDRYHKKDATETEA 633
G G + I+D ++K T+ EA
Sbjct: 200 GSGSLNAYGILDNHYKPKMTDDEA 223
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 51.2 bits (117), Expect = 1e-06
Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
Frame = +1
Query: 184 IQCNDFVMIAAD-QSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQ 360
I +F ++A+D + + I I+ D EKI ++D +++ G GD Q + + +
Sbjct: 57 ISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLH 116
Query: 361 LYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSV 540
Y+ ++ A RNL Y R PY+ ++ G D+ ++ D +
Sbjct: 117 KYRFDYRSDMSVDLCAELLSRNL--YYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIE 174
Query: 541 KVPFAAHGYGGYLSLSIMD 597
++ ++A G + + +D
Sbjct: 175 RLGYSASGAAEPMIIPFLD 193
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 51.2 bits (117), Expect = 1e-06
Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 1/139 (0%)
Frame = +1
Query: 184 IQCNDFVMIAAD-QSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNIQ 360
I +F ++A+D + + I I+ D EKI ++D +++ G GD Q + + +
Sbjct: 57 ISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLH 116
Query: 361 LYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYFVNVLMGGYDKENGPELYFMDYLASSV 540
Y+ ++ A RNL Y R PY+ ++ G D+ ++ D +
Sbjct: 117 KYRFDYRSDMSVDLCAELLSRNL--YYRRFFPYYTGAILAGIDEHGKGAVFSYDPIGCIE 174
Query: 541 KVPFAAHGYGGYLSLSIMD 597
++ ++A G + + +D
Sbjct: 175 RLGYSASGAAEPMIIPFLD 193
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 49.2 bits (112), Expect = 6e-06
Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 5/197 (2%)
Frame = +1
Query: 178 LGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEYIAKNI 357
LGI ++ +++AA++ N H ++ EK+Y++SD + V G + D N ++
Sbjct: 35 LGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWA 94
Query: 358 QLYKMRNGYELGPSAAASFTRRNLAEY--LRSSTPYFVNVLMGGYDKENGPELYFMDYLA 531
Y+ G E+ Y + P+ V++L G+DK G +LY D
Sbjct: 95 ASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSG 154
Query: 532 SSVKVPFAAHGYGGYLSLSIMDRYHKKDATETEAYDILKKCVQEVHKRLFVSLPNFQV-- 705
+ G +++++ + +K E EA + ++ + K L V L + +V
Sbjct: 155 NYTGWKATCIGSNHQAAVTLLKQEYKSPNLE-EAKQL---AIKVLWKTLDVKLASEKVEM 210
Query: 706 -TVVNRDGIKVLPTINS 753
+ RDG VL + +
Sbjct: 211 AVLTRRDGKTVLEELTT 227
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 38.7 bits (86), Expect = 0.008
Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 5/203 (2%)
Frame = +1
Query: 139 YDCKMSNINLQCLLGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSG 318
Y K N + ++ D +IA + S+ I+ D +Y+IS + IG
Sbjct: 27 YAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSL-IVADTVTSVYQISQSVGCCAIGMIP 85
Query: 319 DTNQFAEYIAKNIQLYKMRNGYELGPSAAASFTRRNLAEYLRSSTPYF---VNVLMGGYD 489
D + +K +NGY++ P + +L +Y + +L YD
Sbjct: 86 DAKFQIKRAQGEAASWKYKNGYDM-PCELLAKKMADLNQYYTQNAEMRSLGCALLFISYD 144
Query: 490 KENGPELYFMDYLASSVKVPFAAHGYGGYLSLSIMDRYHKK--DATETEAYDILKKCVQE 663
E GPE+Y +D + + G + S +++ KK + T TEA ++ + +Q
Sbjct: 145 DEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEALQ- 203
Query: 664 VHKRLFVSLPNFQVTVVNRDGIK 732
+ V + +V VV +D K
Sbjct: 204 TSLGIDVRSKDLEVVVVTKDNSK 226
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 38.3 bits (85), Expect = 0.011
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Frame = +1
Query: 163 NLQCLLGIQCNDFVMIAADQSNSHSIMIMKDDEEKIYKISDRLVMGVIGDSGDTNQFAEY 342
N Q +G++ D V++A + S ++ DD+ K+ +IS + G D +
Sbjct: 30 NGQPSVGLRAKDGVVLATENVGS----VLTDDQPKVEQISKHIGCVYSGMGPDFRILVKK 85
Query: 343 IAKNIQLYKMRNGYELGPSAAASFTRRNLAEYLRSS--TPYFVNVLMGGYDKENGPELYF 516
K Y+M G E+ + + EY +S P+ ++L+ G+DK G L F
Sbjct: 86 ARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLF 145
>Z77668-3|CAI46576.1| 284|Caenorhabditis elegans Hypothetical
protein R11G10.3 protein.
Length = 284
Score = 31.9 bits (69), Expect = 0.96
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -2
Query: 684 NKQSFVNFLNTLLKDVICLCFCSIFFMVTIHNTQT*ISTITMSCKWYL 541
+++SFVN + L VICLC + F+V + T + T++ ++ L
Sbjct: 149 HEESFVNNIQVALSFVICLCLV-VLFLVNRYKTANSVGKSTLTTRYQL 195
>Z77655-9|CAI46567.1| 284|Caenorhabditis elegans Hypothetical
protein R11G10.3 protein.
Length = 284
Score = 31.9 bits (69), Expect = 0.96
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -2
Query: 684 NKQSFVNFLNTLLKDVICLCFCSIFFMVTIHNTQT*ISTITMSCKWYL 541
+++SFVN + L VICLC + F+V + T + T++ ++ L
Sbjct: 149 HEESFVNNIQVALSFVICLCLV-VLFLVNRYKTANSVGKSTLTTRYQL 195
>AC006603-1|AAF39749.1| 772|Caenorhabditis elegans Hypothetical
protein B0524.4 protein.
Length = 772
Score = 30.7 bits (66), Expect = 2.2
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 565 YGGYLSLSIMDRYHKKDATETEAYDILKKCVQEVHKRLFVSLPNFQVTVVNRDGIKVLPT 744
+ GYL+ + + HK T +A+DILK ++ + K F + + + VLP
Sbjct: 187 FNGYLNAMTLLKKHKDQDTIEKAFDILKASIRAMQKLNFKDVEKYTTDASLKTLDSVLPE 246
Query: 745 I 747
+
Sbjct: 247 L 247
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 5.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 1171 GXXXXTPXPGGGXXXXXXXPPPPPPG 1094
G P PGG PPPPPPG
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPG 749
Score = 29.5 bits (63), Expect = 5.1
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -1
Query: 1216 PXXXPGXGXXXXXXXGXXXXTPXPGGGXXXXXXXPPPPPPGXXK 1085
P P G G P PGG PPPPPPG K
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGG----CPPPPPPPPPGGFK 781
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 5.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 1171 GXXXXTPXPGGGXXXXXXXPPPPPPG 1094
G P PGG PPPPPPG
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPG 749
Score = 29.5 bits (63), Expect = 5.1
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -1
Query: 1216 PXXXPGXGXXXXXXXGXXXXTPXPGGGXXXXXXXPPPPPPGXXK 1085
P P G G P PGG PPPPPPG K
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGG----CPPPPPPPPPGGFK 781
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 5.1
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 1171 GXXXXTPXPGGGXXXXXXXPPPPPPG 1094
G P PGG PPPPPPG
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPG 332
Score = 29.5 bits (63), Expect = 5.1
Identities = 16/44 (36%), Positives = 16/44 (36%)
Frame = -1
Query: 1216 PXXXPGXGXXXXXXXGXXXXTPXPGGGXXXXXXXPPPPPPGXXK 1085
P P G G P PGG PPPPPPG K
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPPPGG----CPPPPPPPPPGGFK 364
>Z54270-8|CAA91029.2| 301|Caenorhabditis elegans Hypothetical
protein F11C1.4 protein.
Length = 301
Score = 28.7 bits (61), Expect = 8.9
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
Frame = +1
Query: 292 VMGVIGDSGDTNQFAEYIAKNIQLYKMRNGYELGPSAAASFTRRN---LAEYLRSSTPYF 462
V+G G+ G F + +N+ + R G + + N L LR S +
Sbjct: 24 VLGNPGNDGFYTDFGRRLIRNLIAREERLGTRRVQFVFYTLSHLNHVLLPTSLRCSESHK 83
Query: 463 VNVLMGGYDKENGPELYFMDYLASSVKVPFAAHGYGGYLSLSIMDRYHKKD 615
VN D+ + +YL +V HG G Y+ LSI+ Y K D
Sbjct: 84 VNERFSLADQVQHKLDFVKEYLPRGNRVYMFGHGDGAYMLLSILP-YIKDD 133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,375,583
Number of Sequences: 27780
Number of extensions: 414281
Number of successful extensions: 1800
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1677
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3412067766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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