Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B08
         (1209 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    32   0.14 
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    31   0.42 
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    29   1.3  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    27   5.2  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   9.1  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 782 CYRCQKWGHSQRYCHGIIKCVKCAGNHSYKKCNRNKTTEPPKCANC 919
           CY C  +GH  R C   +KC  C G   ++     + ++   C  C
Sbjct: 118 CYACGSYGHQARDCTMGVKCYSC-GKIGHRSFECQQASDGQLCYKC 162



 Score = 30.3 bits (65), Expect = 0.56
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 779 QCYRCQKWGHSQRYCHGIIKCVKCAGNHSYKKCNRNKTTEPPKCANCGSDHTANYKL--C 952
           +CY C + GH  R C     C  C  N +  K   ++ TEP +   C +  TA + +  C
Sbjct: 18  RCYNCGENGHQARECTKGSICYNC--NQTGHKA--SECTEPQQEKTCYACGTAGHLVRDC 73

Query: 953 PXYPD 967
           P  P+
Sbjct: 74  PSSPN 78


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 30.7 bits (66), Expect = 0.42
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 785 YRCQKWGHSQRYCHGIIKCVKCAGNHSYKKCNRNKTTEPP 904
           Y C  W    +  +G I+CV CA   +Y     +K T+ P
Sbjct: 363 YACDCWDAEIQCSYGWIECVGCADRSAYDLSVHSKATKTP 402


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 473 LQYLERKQLPYHTFGHPAKRKMKVVIRGLPNNIDLDKVKLELKSLLIPVIRVH 631
           LQ L RK  P  +  HP KR+ + V      + DL+ +  +  S+L+P +  H
Sbjct: 214 LQGLTRK--PKESIPHPTKRRKRAVGSAPSVSTDLNNILDDDNSILVPDLSAH 264


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 899 PPKCANCGSDHTANYK 946
           PP C NCG+  TAN++
Sbjct: 348 PPYCQNCGTIKTANWR 363


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
 Frame = +2

Query: 743 DVTLEPPISKIQQCYRCQKWGHSQRYCHGIIKCVKCAGNHSYKKC---NRNKTTEPPKCA 913
           D  LE P  +   C  C K   + +YC     C  C G +   KC   + +       C 
Sbjct: 171 DHVLERPAVENMLCMICSKVQPAAQYCK---YCKNCMGRYYCNKCKLWDDDPNKSSYHCD 227

Query: 914 NCG 922
           +CG
Sbjct: 228 DCG 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,627,633
Number of Sequences: 5004
Number of extensions: 69558
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 653435696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)