Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_B08
(1209 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0067 - 17799260-17799615,17799736-17800134,17800400-17800412 35 0.15
11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549... 31 2.4
06_01_0633 - 4616331-4616443,4616576-4616689,4616912-4617570,461... 31 2.4
08_01_0222 - 1772266-1772358,1781205-1781596,1781898-1782183,178... 30 4.2
04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572... 30 4.2
02_05_0563 + 29998291-29998753,29999256-29999468,29999550-299996... 30 4.2
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56... 29 5.5
10_08_0252 - 16191136-16191279,16191639-16191750,16191833-161919... 29 9.7
08_01_0235 + 1944542-1944761,1945129-1945703 29 9.7
06_03_0040 - 15801686-15801993,15802030-15802662,15802989-15803109 29 9.7
>01_05_0067 - 17799260-17799615,17799736-17800134,17800400-17800412
Length = 255
Score = 34.7 bits (76), Expect = 0.15
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 644 RNYENNSSSPILAVVPHDEEGKRILKVKKILNIDVTLEPPISKIQQCYRCQKWGHSQRYC 823
+N E +S +V D G+++ K KK K+ QC+RC +WGH R C
Sbjct: 61 KNKEGETSQAEGLLVKEDHVGRKVKKNKK------------KKMVQCFRCDEWGHISREC 108
>11_04_0430 +
17653553-17654285,17654305-17654627,17654795-17654921,
17655123-17655338,17655463-17655494
Length = 476
Score = 30.7 bits (66), Expect = 2.4
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +2
Query: 767 SKIQQCYRCQKWGHSQRYCHGIIKCVKC-AGNHSYKKCNRNKTTEPPKCANCGSDHTANY 943
++++ C RC + GH C + C C H Y KC K +P G H +
Sbjct: 195 ARVKVCSRCTQKGHGVADCKVDVYCDICDCSVHVYHKCPVLKLPKPVVQGGLGFQHIPHQ 254
Query: 944 KL 949
L
Sbjct: 255 PL 256
>06_01_0633 -
4616331-4616443,4616576-4616689,4616912-4617570,
4617593-4617672
Length = 321
Score = 30.7 bits (66), Expect = 2.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 853 GTFHTLDNAMTVPL*MSPFLAAITLLNFTNGWF 755
GT H+++N + +P+ F I +LN GWF
Sbjct: 197 GTHHSIENQVKIPVATVVFYNLIRMLNGDEGWF 229
>08_01_0222 -
1772266-1772358,1781205-1781596,1781898-1782183,
1782313-1782372
Length = 276
Score = 29.9 bits (64), Expect = 4.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 299 HKLKQKVPVVFIHKPIEFPILQWHIKNILILS 394
H +PV+ I +P+ FP+ Q ++N+LIL+
Sbjct: 196 HGFPLALPVMGISEPLRFPLYQEWLQNVLILA 227
>04_01_0438 -
5723451-5723759,5723795-5723863,5724025-5724210,
5724297-5724558,5724662-5724960,5725040-5725453,
5725533-5725899,5726002-5726146,5726562-5727558
Length = 1015
Score = 29.9 bits (64), Expect = 4.2
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +2
Query: 695 DEEGKRILKVKKILNIDVTLEPPISKIQQCYRCQKWGHSQRYC 823
D+ G+R K ++I N D+ E ++++C +C + GH+ +YC
Sbjct: 282 DKAGRR--KTRRIRN-DMD-ESEAGRVKRCSKCDERGHTYKYC 320
>02_05_0563 +
29998291-29998753,29999256-29999468,29999550-29999667,
30000227-30000355,30000438-30000810,30000890-30001147,
30001192-30001227
Length = 529
Score = 29.9 bits (64), Expect = 4.2
Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 626 VHKMHIRNYENN-SSSPILAVVPHDEEGKRILKVKKILNIDVTLEPPISKIQQCYRCQK 799
++ + + + E++ PI P D GK +++ +++++ + P + K Q+ YRC+K
Sbjct: 165 IYYLALNSLEDDLGEDPIELDSPEDALGKDPIELHGQISMEIHMPPLMMKFQKDYRCEK 223
>05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-563327,
563716-566278
Length = 1016
Score = 29.5 bits (63), Expect = 5.5
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +2
Query: 779 QCYRCQKWGHSQRYCHGI----IKCVKCAGNHSYKKCNRNKTTEPPKCANC 919
+CY+C++ GH R C G ++C KC + + ++T +C C
Sbjct: 925 ECYKCKQPGHYARDCPGQSTGGLECFKCKQPGHFSRDCPVQSTGGSECFKC 975
>10_08_0252 -
16191136-16191279,16191639-16191750,16191833-16191924,
16192564-16192641,16192764-16192796,16193712-16193771,
16193912-16193999,16194155-16194180
Length = 210
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 782 CYRCQKWGHSQRYCHGIIKCVKCAGNHSYKKCN 880
C C K Q+YC G C C G + +KCN
Sbjct: 61 CSLCDKEQDVQQYCSG---CGACMGKYFCEKCN 90
>08_01_0235 + 1944542-1944761,1945129-1945703
Length = 264
Score = 28.7 bits (61), Expect = 9.7
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +2
Query: 317 VPVVFIHKPIEFPILQ-WHIKN-ILILSINIYDPY-FSKNY 430
VPVV I +P+ FP LQ W ++N S ++ PY F+K++
Sbjct: 158 VPVVGISEPLRFPQLQKWIVENCTATASSDVMVPYEFTKHF 198
>06_03_0040 - 15801686-15801993,15802030-15802662,15802989-15803109
Length = 353
Score = 28.7 bits (61), Expect = 9.7
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 644 RNYENNSSSPILAVVPHDEEGKRILKVKKILNIDVTLEPPISKIQQCYRCQKWGHSQRYC 823
+N E +S +V D G ++ K KK K+ QC+RC + GH R C
Sbjct: 114 KNKEGETSQAEGLLVKEDHAGHKVKKNKK------------KKMVQCFRCDELGHISREC 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,474,141
Number of Sequences: 37544
Number of extensions: 401244
Number of successful extensions: 986
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3701409336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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