Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_B08
(1209 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 34 0.18
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 32 0.94
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 32 0.94
U97593-1|AAB52875.1| 715|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 30 2.9
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 30 2.9
AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical ... 30 3.8
U88315-13|AAN84844.1| 359|Caenorhabditis elegans Hypothetical p... 29 6.6
U88315-12|AAB42367.1| 444|Caenorhabditis elegans Hypothetical p... 29 6.6
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 34.3 bits (75), Expect = 0.18
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Frame = +2
Query: 749 TLEPPISKIQQ---CYRCQKWGHSQRYCHGIIKCVKCAGNHSYKKC---NRNKTTEP 901
T E I K ++ C+ C + GH + C C C GNH C NRN T P
Sbjct: 334 TAEARIQKAREIGLCFGCLRSGHQRSKCSRPRTCNHCKGNHHTVFCQSHNRNATRNP 390
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 31.9 bits (69), Expect = 0.94
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Frame = +2
Query: 539 KVVIRGLPNNIDLDKVKLELKSLLIPVIRVHKMHI-RNY-----ENNSSSPILA-VVPHD 697
K+ + LP+N+D +K LK + P +V + I +NY E + PI+ + +
Sbjct: 4 KLFVGNLPDNVDSNK----LKQVFQPFCKVTECDIVKNYAFVHIEEDDVDPIITRLTGYT 59
Query: 698 EEGKRILKVKKILNIDVTLEPPISKIQQCYRCQKWGHSQRYC 823
+GK ++ +KK + L P +C+RCQ H C
Sbjct: 60 IDGK-VVNIKKSTS---KLRPTPGMPNRCFRCQSDEHRTPQC 97
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 31.9 bits (69), Expect = 0.94
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Frame = +2
Query: 539 KVVIRGLPNNIDLDKVKLELKSLLIPVIRVHKMHI-RNY-----ENNSSSPILA-VVPHD 697
K+ + LP+N+D +K LK + P +V + I +NY E + PI+ + +
Sbjct: 4 KLFVGNLPDNVDSNK----LKQVFQPFCKVTECDIVKNYAFVHIEEDDVDPIITRLTGYT 59
Query: 698 EEGKRILKVKKILNIDVTLEPPISKIQQCYRCQKWGHSQRYC 823
+GK ++ +KK + L P +C+RCQ H C
Sbjct: 60 IDGK-VVNIKKSTS---KLRPTPGMPNRCFRCQSDEHRTPQC 97
>U97593-1|AAB52875.1| 715|Caenorhabditis elegans Hypothetical
protein C46G7.3 protein.
Length = 715
Score = 31.5 bits (68), Expect = 1.2
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 764 ISKIQQCYRCQKWGHSQRYCHGIIKCVKCAGNHSYKKC 877
I+ +C C HS C+ +KC C+G H C
Sbjct: 644 IANDNRCAVCAGERHSSSMCYSTLKCTYCSGRHHPAGC 681
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 30.3 bits (65), Expect = 2.9
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = +2
Query: 782 CYRCQKWGHSQRYCHGIIK-CVKCAG-NHSYKKC---NRNKTTEPPK 907
C+ C+K+GH C + C C NH +C ++N EP K
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNGVQEPTK 250
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 30.3 bits (65), Expect = 2.9
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = +2
Query: 782 CYRCQKWGHSQRYCHGIIK-CVKCAG-NHSYKKC---NRNKTTEPPK 907
C+ C+K+GH C + C C NH +C ++N EP K
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNHRANECASWSKNGVQEPTK 250
>AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical
protein Y6D1A.1 protein.
Length = 681
Score = 29.9 bits (64), Expect = 3.8
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +2
Query: 836 KCVKCAGNHSYKKCNRNKTTEPPKCANCGSD----HTANYKLCP 955
+C +C G HS+K C + + C C + NY LCP
Sbjct: 626 RCTRCLGKHSFKNC---RLVKLHVCRYCNDEDPNVELHNYGLCP 666
Score = 29.5 bits (63), Expect = 5.0
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 773 IQQCYRCQKWGHSQRYCHGIIKCVKCAGNHSYKKCNRNKTTEPPKCANCGSD-HTANYKL 949
+ QC++ + ++ +C +C G HS+K C K C + + NY L
Sbjct: 276 VDQCFKFINVNNRRKALIMAGRCTRCLGRHSFKDCRSAKFNVCMYCKDEDPNVELHNYGL 335
Query: 950 C 952
C
Sbjct: 336 C 336
>U88315-13|AAN84844.1| 359|Caenorhabditis elegans Hypothetical
protein C37H5.3b protein.
Length = 359
Score = 29.1 bits (62), Expect = 6.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 278 QPXHKKWHKLKQKVPVVFIH 337
QP K++H+L VPV FIH
Sbjct: 268 QPMSKRFHELDNTVPVTFIH 287
>U88315-12|AAB42367.1| 444|Caenorhabditis elegans Hypothetical
protein C37H5.3a protein.
Length = 444
Score = 29.1 bits (62), Expect = 6.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 278 QPXHKKWHKLKQKVPVVFIH 337
QP K++H+L VPV FIH
Sbjct: 353 QPMSKRFHELDNTVPVTFIH 372
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,255,199
Number of Sequences: 27780
Number of extensions: 398555
Number of successful extensions: 1065
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3328592102
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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