Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B08
         (1209 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    27   0.25 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    27   0.25 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   7.1  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 27.5 bits (58), Expect = 0.25
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 461 QKLLLQYLERKQLPYHTFGHPAKRKMKVVIRGLPNNIDLD 580
           + LL+ Y E  QLP H  G P   K  ++IR +    +LD
Sbjct: 42  ENLLMNY-ENNQLPTHGKGTPTVVKTNILIRSMGPVSELD 80


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 27.5 bits (58), Expect = 0.25
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +2

Query: 587 KLELKSLLIPVIRVHKMHIRNYENNSSSPILAVVPHDEEGKRILKVKK 730
           K+E K LL+PV    K +I  Y+  S + I     +++ G+  L++KK
Sbjct: 132 KIEGKVLLLPVRGAGKSNITMYDLKSHNDIYC-EKYEKNGETYLRIKK 178


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 785 YRCQKWGHSQRYCHGI 832
           YRC    ++ +YCH +
Sbjct: 45  YRCANCTYATKYCHSL 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,140
Number of Sequences: 438
Number of extensions: 5508
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41331843
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)