Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B06
         (1192 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr...   220   3e-58
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    28   2.2  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    28   2.9  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   3.9  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   5.1  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    27   6.8  

>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score =  220 bits (538), Expect = 3e-58
 Identities = 101/159 (63%), Positives = 129/159 (81%)
 Frame = +2

Query: 497 EALLPDMANSYRLLLTGLGEDPERAGLLKTPERAAKAMLFFTKGYDQSLEEVLNNAIFDE 676
           E  +  ++N+   +L  LGEDPER GLL TPER AKAML+FTKGY+Q+L EV+N A+F E
Sbjct: 49  EEKVKKISNAISTILECLGEDPERQGLLGTPERYAKAMLYFTKGYEQNLTEVINEAVFQE 108

Query: 677 DTDEMVVVKDIEMFSMCEHHLVPFYGKVSIGYLPQGKILGLSKLARIVEIFSRRLQVQER 856
           D +EMV+V+DI++FS+CEHHLVPF GK+ IGY+P+ ++LGLSKLARI  +FSRRLQVQER
Sbjct: 109 DHEEMVIVRDIDVFSLCEHHLVPFIGKIHIGYIPRKRVLGLSKLARIANMFSRRLQVQER 168

Query: 857 LTKQIAIAVTQAVRPAGVAVVIEGVHMCMVMRGVQKINS 973
           LTKQ+A A+   ++P GVAVV+E  HMCMVMRGV+K  S
Sbjct: 169 LTKQVAQAIQAVLKPQGVAVVMEATHMCMVMRGVEKPGS 207


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
 Frame = +2

Query: 323 VGKYKKAPEALKXFNLADAE-SELEVPGTPMTPRTSTTPGHENCTFHHDLELDHRPPTRE 499
           +GK     +  K   + +A+  ++    +P    +    GH    FHH++ +   P    
Sbjct: 212 IGKPYIKVDPKKVIGIVEADYGDITCANSPQDETSQAIAGHLVDFFHHEVSVGRLPKNLH 271

Query: 500 ALLPDMANSYRLLLTGLGEDP 562
            L   + N    ++ GL   P
Sbjct: 272 PLQSGIGNIANAIIGGLAHSP 292


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 751 RKGLHRVPATRKNSGSQQTGQD-RGNILPPSSGTRTSDE 864
           +K +HR    RK  GSQ    + +GNI    SG R  +E
Sbjct: 233 QKTIHRYTTRRKQGGSQGAADNTKGNIHSAGSGLRRYNE 271


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 347 LELFCIYQRTSPSEERHRXLXPRISNYVWSAN*RDVSAKMAALPLPSS 204
           + LF  Y+++S S+ER+  L      Y +      +SAK+A++  P S
Sbjct: 561 MHLFEAYEKSSSSQERNLLLNKTCQGYGFQTIGPALSAKVASVFFPES 608


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 7/101 (6%)
 Frame = +3

Query: 417  RGLRPRLV-TRTAPSTMTWNWTTDRPPGRRCYRTWLTHTGFYSPAW---GRTLKGQGS*R 584
            RG+RP  + T   P+   W      P      RT   +TG  +PAW    +T       R
Sbjct: 794  RGIRPGSISTADGPNVPNWAQGARTPAVANGSRTPAWNTGSRTPAWNSGSKTPAWNSGSR 853

Query: 585  RP--NVPPKLCSSSRKDTTKAWKRF*TTPS-SMKTRTRWWS 698
             P  N   K  + +    T AW     TP+ ++  +T  W+
Sbjct: 854  TPAWNSGNKTPAWNAGSRTPAWNSGNKTPAWNVGNKTPAWN 894



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
 Frame = +3

Query: 447  TAPSTMTWNWTTDRPPGRRCYRTWLTHTGFYSPAW---GRTLKGQGS*RRP--NVPPKLC 611
            T   T  WN  +  P      RT   ++G  +PAW    RT       + P  NV  K  
Sbjct: 832  TGSRTPAWNSGSKTPAWNSGSRTPAWNSGNKTPAWNAGSRTPAWNSGNKTPAWNVGNKTP 891

Query: 612  SSSRKDTTKAWKRF*TTPS-SMKTRTRWWS 698
            + +    T AW     TPS +  T+T  W+
Sbjct: 892  AWNSGAKTPAWNAGNKTPSWNNGTKTPAWN 921


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 682 RVFIEDGVVQNLFQALVVSFREEEHSFGGTFGR 584
           R  I    V  +FQ+++ ++R+  HSF G  GR
Sbjct: 110 RAQISKTSVSQIFQSMIHNYRDLWHSFKGMCGR 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,806,404
Number of Sequences: 5004
Number of extensions: 77442
Number of successful extensions: 225
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 641482604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)