Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B04
         (1158 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    28   2.8  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    28   2.8  
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p...    27   3.7  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    27   3.7  
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   3.7  
SPBC1709.09 |||mitochondrial translation termination factor|Schi...    27   5.0  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   5.0  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   5.0  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   6.5  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   8.7  
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |...    26   8.7  
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy...    26   8.7  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    26   8.7  

>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +1

Query: 610 HTFEGLLKNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMFREETIESQKQLVK 777
           HT + +   LE+ ++    +  ++     + +A   D+FKA F+E T +  K  V+
Sbjct: 532 HTADSIRTELEECNYQYKVQYNDRVLTADSYIAEGLDIFKAAFKEFTQKFGKSEVR 587


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 439 STQIEGEPE--LGCLEYVSTYNFSNLDVGFMKNKSLYIAIAFPSP 567
           + +I+G PE  LGC  Y++  N +NL V     K  Y+A  +  P
Sbjct: 366 AAKIDGVPEYALGCHNYLNLPNIANLLVNPRTGKHGYVAKFYLEP 410


>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 865 VNLLMIADRYNLKGLRXLSQCALAEQLTIENAFYILAMA 981
           V LL +ADRY L G   L   A A     ++   +L  A
Sbjct: 191 VRLLAVADRYGLNGEEVLDNVAYARAYNADHQLELLQQA 229


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 485 TYSKQPSSGSPSICVELLFSLVFSNLYSFS 396
           +YS++P   SPS  ++  FS V S L  FS
Sbjct: 403 SYSEEPPQSSPSSTLQYTFSTVRSALSGFS 432


>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -3

Query: 823 DILSSISNLLQSRLQVLPTASDSQLSLP*T*L*IHHYVQPEWLYAL 686
           D +   S+LL   + +L T S S LS   T +   +Y++P+WLY L
Sbjct: 26  DNIQVSSSLLSFLIYILYTFSISGLS---TFVITKYYIRPQWLYTL 68


>SPBC1709.09 |||mitochondrial translation termination
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 24/102 (23%), Positives = 48/102 (47%)
 Frame = +1

Query: 496 NFSNLDVGFMKNKSLYIAIAFPSPKILNLNVFDKLLTVHTFEGLLKNLEDADFTLVSEDG 675
           NF+ L+  F+ +KS    I  P+P  L L     +    + + +++  ED D   + +  
Sbjct: 88  NFTQLEALFIPSKS----IKAPTPSRL-LREIAAVSQKGSQQIIIRPFEDVDIKNILKAI 142

Query: 676 EKFRVHKAILAAHSDVFKAMFREETIESQKQLVKLVDVTAED 801
           E  R        ++   +   +  T+ES++QL K+++  A+D
Sbjct: 143 EDSRYPFVANKLNASTIEVKPQRTTLESRQQLAKVLEGYAKD 184


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 26/90 (28%), Positives = 40/90 (44%)
 Frame = -2

Query: 887 SAIISRLTKSAFSKXXR*PVYRYSIKYFKSSAVTSTSFTNCF*LSIVSSLNIALNTSLCA 708
           S+  S L+ S  S      V   S   F S+A TSTS +     S+VSS +   ++S   
Sbjct: 172 SSTFSSLSSSTSSSQPS--VSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSST 229

Query: 707 ARMALCTLNFSPSSDTKVKSASSKFLSNPS 618
              +  + +  PS+ +   S SS   S+ S
Sbjct: 230 LTSSSLSTSSIPSTSSSSSSTSSSLSSSSS 259



 Score = 26.2 bits (55), Expect = 8.7
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
 Frame = -2

Query: 797 SAVTSTSFTNCF*LSIVSSLNIALNTSLCAARMALCTLNFSPSSDTKVKSASSKFLSNP- 621
           S  +S+S T+    S  SS   + ++S  +   +  + + SP+S +   S+SS   S+P 
Sbjct: 242 STSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPT 301

Query: 620 SKV*TVNNLSKTFRFSIFGLGNAMAMYSDLFFMNPTSRLEKL*VLTYSKQPSSGS 456
           S   T+++ S +       L ++    S  F  +PTS      + + S  PSS S
Sbjct: 302 STSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSST--ISSSSSSPSSSS 354


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = +1

Query: 616 FEGLLKNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMFRE-ETIESQKQL-VKLVD 786
           F  LLK+L  ++ +++ +D +   +HK +L   + +   M R   +I+ +K + ++L+D
Sbjct: 91  FRNLLKSLSKSNVSVLPDDSDATHLHKWLLKFQNMLTLLMSRAFHSIQDEKNINIELLD 149


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
 Frame = +1

Query: 469 GCLEYVSTYNFSNLDVGFMK---NKSLYIAIAFPSPKILNLNVFDKLLTVHTFEGLLKNL 639
           G L  ++ +N  NLDV   +    K L + ++F        +++  L  +  FEG +KN 
Sbjct: 524 GILMGIAIHNSINLDVQMPRAFYKKLLQLPLSFNDLDDFQPSLYRGLKELLLFEGDVKNT 583

Query: 640 EDADFTLVSEDGEKFR 687
              +FT+  +  E FR
Sbjct: 584 YGLNFTINLKAVEGFR 599


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/53 (24%), Positives = 29/53 (54%)
 Frame = -3

Query: 175 DXHFQYRAILHRMFDKNDGPKLYLYFLL*EYQKXMFGXRYXIAPFSPNLKNSL 17
           D +  Y  + HR+ ++ + PK+++   L +YQ  + G  + ++ ++ NL   L
Sbjct: 842 DKNLDYFKVAHRIHEEVEQPKIFVGGTLKDYQ--LKGLEWMLSLYNNNLNGIL 892


>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 190

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +1

Query: 190 PNYYDIGGTYYLEDLPDXWFTSKTEQVGDIFLLHIFIQRYCEGSFSISISYGSEMEIDKK 369
           P + D      + D  + +     E +  I  L   I++  +GS +         + D  
Sbjct: 15  PKFLDASVLRQIPDNQEVFLQDSKENLTVIIELLEKIEKPFDGSVAAYHFNSIAFDNDAS 74

Query: 370 QKIVRLTKSLKEYKFENTR-ENSNSTQIEG 456
           Q+++   KSL E  FE  R E ++ + ++G
Sbjct: 75  QRVIWRDKSLGEDDFEGMRSEKASGSSVQG 104


>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +1

Query: 271 GDIFLLHIFIQRYCEGSFSISISYGSEMEIDKKQKIVRLTKSLKEYKFENTRENSNSTQI 450
           G++FLL   +QR    + S+  S+  E  I+ K +      S+   ++E ++    + QI
Sbjct: 14  GELFLLPSHLQRMKASAKSLGYSWPGEQYIENKLREAVQDTSMARVRWELSKAGDVTVQI 73


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 355 EIDKKQKIVRLTKSLKEYKFENTRENSNSTQIEGEPELGCLEYVSTYNFSNLDVG 519
           +ID   ++ R  K ++  K +N R +++   +  E      +YV  +NF N  VG
Sbjct: 292 KIDPSYRLERALKHIEVLKLKNYRISADRLSVIRET---LNQYVGVHNFHNFTVG 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,152,954
Number of Sequences: 5004
Number of extensions: 84488
Number of successful extensions: 261
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 619568602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)