Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B03
         (1201 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    28   2.2  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    28   2.2  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    27   3.9  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   5.2  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    27   5.2  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   9.0  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   9.0  

>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 601 RLWK*QERGLRGKNLLSLATIFGIN 675
           R+W  Q+RGL   NL  LA  +GIN
Sbjct: 798 RIWNAQKRGLSINNLEELAKKYGIN 822


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 705 WGTPKYFKSGFHAEDISDPERYGTKLNVYKWSTRELQQVIDLGS 836
           W T   F       D+SDP   GT +++Y    RE   +ID  +
Sbjct: 368 WRTVFEFCKALLQFDMSDPYAIGTCIDIYALRRREFAWIIDFAN 411


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 876 PKSAQGFVGCAVQANVYRFYKTAEGTWKAXKVI 974
           PKS +  V C+   N Y + K  +GTWK   V+
Sbjct: 65  PKSNR-IVTCSQDRNAYVYEKRPDGTWKQTLVL 96


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 264 YGQVIHR-TYTGVTGDELHHSGWNVCSSCHDN 356
           Y   IH+ TY+GV   E   +G+ +   CHDN
Sbjct: 2   YNDQIHKITYSGVEVFEYTINGFPLMKRCHDN 33


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 17/78 (21%), Positives = 34/78 (43%)
 Frame = +3

Query: 744 EDISDPERYGTKLNVYKWSTRELQQVIDLGSEGCAPLEIRFLHDPKSAQGFVGCAVQANV 923
           +D+S+ ER   K    K + R+ ++++ +     AP++I   H+        G A  A  
Sbjct: 359 QDLSEAERVKLKRERRKANQRKQREIVRMQMGMLAPMDIGLEHEAMGEDSLFGLAT-AEK 417

Query: 924 YRFYKTAEGTWKAXKVID 977
           +   +   GT    + +D
Sbjct: 418 HGLKELENGTLPVTESVD 435


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 374 VSLQCRVVMATRTHIPAAVMQFVSCYSRVGAVNDLAVCCGFR 249
           +S+Q R  +    H PAA++ F+SC S +  +  L +    R
Sbjct: 359 LSVQLRWFITYIFHPPAAMILFISCTSFISGILQLVLLNNIR 400


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +3

Query: 306 DELHHSGWNVCSSCHDNAALKRDLLIMPGLHSCNVYAVD 422
           DEL+H  WN     H N   +   L++   +    Y  D
Sbjct: 473 DELYHGEWNTVPGHHKNPKCRAKKLVVESRNGRREYVQD 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,513,592
Number of Sequences: 5004
Number of extensions: 97274
Number of successful extensions: 276
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)