Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_B03
(1201 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1797 + 39941482-39941608,39942302-39942497,39942601-399428... 312 4e-85
04_04_1028 + 30230224-30231274,30231500-30231609,30232144-302321... 34 0.19
03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779 31 1.8
11_04_0442 - 17790811-17790889,17791047-17791114,17791144-177911... 30 3.1
12_01_0560 - 4532398-4532724,4532975-4533235,4533670-4533855,453... 30 4.2
12_01_1069 - 11060045-11060262,11060404-11060545,11060624-110607... 29 9.6
11_01_0605 + 4821363-4823246 29 9.6
>01_06_1797 +
39941482-39941608,39942302-39942497,39942601-39942828,
39943157-39943388,39943476-39943583,39943696-39943968,
39944261-39944545
Length = 482
Score = 312 bits (766), Expect = 4e-85
Identities = 151/292 (51%), Positives = 183/292 (62%), Gaps = 4/292 (1%)
Frame = +3
Query: 132 GXASPLXAFNNGPREXLLYVVCVRPNK--NKQDYLATVDVDSKSATYGQVIHRTYTGVTG 305
G A+PL A GPRE LLYV CV NK DYL TVDVD S TY QVIHR G
Sbjct: 18 GYATPLEAMEKGPREKLLYVTCVYNGTGINKPDYLGTVDVDPNSPTYSQVIHRLPVTHVG 77
Query: 306 DELHHSGWNVCSSCHDNAALKRDLLIMPGLHSCNVYAVDVGTDPRKPRLHKVIDGSKM-R 482
DELHHSGWN CSSCH + + R LI+P L S VY VD DPR P LHKV++ +
Sbjct: 78 DELHHSGWNACSSCHGDPSASRRFLILPSLLSGRVYVVDTLKDPRAPALHKVVEAEDIAE 137
Query: 483 SFNCSFPHTTHCLATGEIMISTMGDENENGKGD-FVLIDSKTLEVTGTWTKGEKLAKFGY 659
FPHT+HCLA+GEIMIS +GD+ N G+ F+L+DS+ V G W K FGY
Sbjct: 138 KTGLGFPHTSHCLASGEIMISCLGDKEGNAAGNGFLLLDSE-FNVKGRWEKPGHSPLFGY 196
Query: 660 DFWYQPYHDVMVSSEWGTPKYFKSGFHAEDISDPERYGTKLNVYKWSTRELQQVIDLGSE 839
D+WYQP H M+SS WG P F++GF + + D YG L+VY W EL+Q +DLGS
Sbjct: 197 DYWYQPRHKTMISSSWGAPAAFRTGFDLQHVQD-GLYGRHLHVYDWPGGELKQTLDLGST 255
Query: 840 GCAPLEIRFLHDPKSAQGFVGCAVQANVYRFYKTAEGTWKAXKVIDIPAKKV 995
G PLE+RFLHDP G+VGCA+ +N+ RF+KTA+G+W I I KV
Sbjct: 256 GLLPLEVRFLHDPSKDTGYVGCALTSNMVRFFKTADGSWSHEVAISIKPLKV 307
>04_04_1028 +
30230224-30231274,30231500-30231609,30232144-30232170,
30233107-30234252
Length = 777
Score = 34.3 bits (75), Expect = 0.19
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 279 HRTYTGVTGDELHHSGWNVCSSCHDNAALKRDLLIMPGLHSCNVYAV 419
+ +T LHH GW+ SC N + D L PG C+ Y +
Sbjct: 165 YSNFTATFTSSLHHHGWSTNGSCTTNGRVNSDGL-CPGTACCDAYGM 210
>03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779
Length = 704
Score = 31.1 bits (67), Expect = 1.8
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 168 PREXLLYVV-CVRPNKNKQDYLATVDVDSKSATYGQVIHRTYTGVTGDELHHSGWNV 335
P E L ++ C +PN+N +LATVD+D + A + + + G EL ++ W +
Sbjct: 272 PPEALAGLIKCEKPNRNIYGFLATVDLDGRRAV---SLGTSNIMLRGCELKNTAWAI 325
>11_04_0442 - 17790811-17790889,17791047-17791114,17791144-17791166,
17791210-17795913,17797414-17797624,17798478-17798666
Length = 1757
Score = 30.3 bits (65), Expect = 3.1
Identities = 29/111 (26%), Positives = 42/111 (37%)
Frame = +3
Query: 489 NCSFPHTTHCLATGEIMISTMGDENENGKGDFVLIDSKTLEVTGTWTKGEKLAKFGYDFW 668
+ SFP + L ++ N N KG + G+W K GY
Sbjct: 762 DASFPTVSSPLTMDNAILLLEWIRNLNSKGSQLPARFLACIKQGSWLK----TSVGYK-- 815
Query: 669 YQPYHDVMVSSEWGTPKYFKSGFHAEDISDPERYGTKLNVYKWSTRELQQV 821
P + +EWG+ S F + D + YG KL YK +ELQ +
Sbjct: 816 -PPNESFLSGAEWGSLLQTGSSFVDIPMIDQQFYGNKLQEYK---KELQAI 862
>12_01_0560 -
4532398-4532724,4532975-4533235,4533670-4533855,
4533922-4533936,4533941-4534246,4535032-4535135,
4535669-4535801
Length = 443
Score = 29.9 bits (64), Expect = 4.2
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 622 RGLRGKNLLSLATIFGINHTMMLWFPQNGVPRNILKADFTQKIYPTP 762
RGL + SL+ + + + +W N VP N+L +D +KI+ P
Sbjct: 288 RGLVFEGGNSLSDLANVVSSACIWLQDNNVPYNVLISDCGKKIFLFP 334
>12_01_1069 - 11060045-11060262,11060404-11060545,11060624-11060776,
11060942-11061013,11062774-11063082,11063323-11063378,
11066436-11066533,11066616-11066700,11066800-11067001,
11067471-11067542,11069555-11069624,11071829-11072038,
11072337-11072609,11073912-11074183,11075354-11075557
Length = 811
Score = 28.7 bits (61), Expect = 9.6
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +1
Query: 856 KSDFFMIRNPLKDLSGVQ--SRPMFTDSTKLPKELGKXIK-SSTYRLKKFQRWSRVGTNG 1026
+S F + LK +G Q P+F D + L +G + S T KK Q+W +N
Sbjct: 482 RSSFSGLTLCLKQRTGDQYYGGPLFRDKSHL---IGTTFQWSGTTSKKKGQKWGMDNSNK 538
Query: 1027 LISDILYH 1050
SDI YH
Sbjct: 539 KSSDISYH 546
>11_01_0605 + 4821363-4823246
Length = 627
Score = 28.7 bits (61), Expect = 9.6
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = -1
Query: 493 QLNDLIFEPSITLCNRGFLGSVPTSTA*TLQE 398
QL+DL S+ L + GF G VPTS A +L++
Sbjct: 175 QLSDLPKLRSLNLSSNGFEGPVPTSIATSLED 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,227,567
Number of Sequences: 37544
Number of extensions: 639667
Number of successful extensions: 1517
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3666490380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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