Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B02
         (1148 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    24   2.5  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    24   2.5  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    23   3.3  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   3.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   3.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   3.3  

>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = +1

Query: 61  LLPGVPRATRPPQHVGWGRVGPVRRPAASSDVARPL 168
           L P VPR   P     WG +     P  S+    P+
Sbjct: 69  LHPSVPRLGHPQWPFAWGSLXRSSSPQTSAPTGPPI 104


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 67  PGVPRATRPPQHVGWGRVGPVRRPAASS 150
           P  P A  P   VG+G VG V    ASS
Sbjct: 138 PVRPAACTPDSRVGYGSVGLVGGDPASS 165


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 158 ATSLDAAGRRTGPTRPQPTCWGGRVARGTPG 66
           AT +     R  P +  PT +GGR+    PG
Sbjct: 73  ATKVHGTTVRVRPPKVYPTPYGGRLVWTLPG 103


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 158 ATSLDAAGRRTGPTRPQPTCWGGRVARGTPG 66
           AT +     R  P +  PT +GGR+    PG
Sbjct: 387 ATKVHGTTVRVRPPKVYPTPYGGRLVWTLPG 417


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 158 ATSLDAAGRRTGPTRPQPTCWGGRVARGTPG 66
           AT +     R  P +  PT +GGR+    PG
Sbjct: 620 ATKVHGTTVRVRPPKVYPTPYGGRLVWTLPG 650


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 158 ATSLDAAGRRTGPTRPQPTCWGGRVARGTPG 66
           AT +     R  P +  PT +GGR+    PG
Sbjct: 620 ATKVHGTTVRVRPPKVYPTPYGGRLVWTLPG 650


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,244
Number of Sequences: 336
Number of extensions: 3659
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 33403428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)