Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_B02
(1148 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0534 - 4635122-4635380,4635716-4635837 31 1.3
02_05_0519 - 29708600-29709079 31 1.3
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241 31 2.3
02_01_0302 - 2021221-2023305 30 3.0
10_01_0144 - 1705429-1706250 30 4.0
05_01_0141 - 937428-937717,938483-938705 30 4.0
10_08_0108 + 14860469-14861032 29 5.2
06_03_0215 - 18080286-18080914,18080925-18080997 29 6.9
04_04_1164 - 31413577-31414080,31414435-31414647 29 6.9
02_05_0068 - 25569066-25569311 29 6.9
01_06_1440 + 37378121-37378958,37379344-37379494,37379567-373799... 29 6.9
>08_01_0534 - 4635122-4635380,4635716-4635837
Length = 126
Score = 31.5 bits (68), Expect = 1.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 107 AGVAWARCAGRRRPATSLGLWTGRATDVTR 196
+GV W C GR +++G WTG A + TR
Sbjct: 71 SGVKWKSCGGRTGSRSAVGRWTG-AVEATR 99
>02_05_0519 - 29708600-29709079
Length = 159
Score = 31.5 bits (68), Expect = 1.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 133 GAPGPRDPSQHVGAGALHAGPLATGPLRCHECRSXR 26
GAP R P V AG L+ P+ GP+ + C+ R
Sbjct: 7 GAPSFRPPRAPVSAGRLYRCPVCPGPVILYSCQDLR 42
>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
Length = 1445
Score = 30.7 bits (66), Expect = 2.3
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 26 SSTSALVAAQRACCQGSRVQRARPNMLAGVAWARCAGRR 142
S L+A+ RACC+G + A +L V W GR+
Sbjct: 1295 SDARVLLASTRACCEGISLTGASRVVLLDVVWNPAVGRQ 1333
>02_01_0302 - 2021221-2023305
Length = 694
Score = 30.3 bits (65), Expect = 3.0
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 148 WTPPAGAPGPRDPSQHV-GAGALHAGPLATGPLRCH 44
+ PP+G PG P+QHV GAG P T P H
Sbjct: 592 YQPPSGQPGASPPTQHVPGAGT----PTTTPPSHSH 623
>10_01_0144 - 1705429-1706250
Length = 273
Score = 29.9 bits (64), Expect = 4.0
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 143 AAGRRTGPTRPQP-TCWGGRVARGTPGNRPAALPRVPKXKKAXVG 12
A GRR P P T GGR G+ P+ LPRV + ++ G
Sbjct: 78 AEGRRRVEVAPAPPTARGGRAGVVASGSGPSPLPRVARSGQSGAG 122
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 29.9 bits (64), Expect = 4.0
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -2
Query: 142 PPAGAPGPRDPSQHVGAGALHAGPLATG 59
PPAG PG P QH G + G LA G
Sbjct: 61 PPAGYPGSSAPFQHGNHGGGNMGMLAAG 88
>10_08_0108 + 14860469-14861032
Length = 187
Score = 29.5 bits (63), Expect = 5.2
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -2
Query: 136 AGAPGPRDPSQHVGAGALHAGPLATGPLRCHECRSXRR 23
A + G D G+G A P T PLRC R RR
Sbjct: 2 AASDGDDDDEHRQGSGGGEARPRTTLPLRCRRWRRRRR 39
>06_03_0215 - 18080286-18080914,18080925-18080997
Length = 233
Score = 29.1 bits (62), Expect = 6.9
Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 37 GTRGSAAGLLPGVPRATRPPQHVGWG-RVGPVRRPAASSDVARPLDWPRY*RDSPRRLAT 213
G A LP V A RPP G +VGP R+P A + A D PR R P T
Sbjct: 150 GDHRGAGARLPSVEPA-RPPSAASRGCQVGPGRQPPAPAGAADAWD-PR--RRPPPAACT 205
Query: 214 RQT 222
R T
Sbjct: 206 RST 208
>04_04_1164 - 31413577-31414080,31414435-31414647
Length = 238
Score = 29.1 bits (62), Expect = 6.9
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 23 PSSTSALVAAQRACCQGSRVQRARPNMLAGVAWARCAGRRRPATS 157
PSS +A + A C V+ A AG + A A R PATS
Sbjct: 97 PSSAAAAASTSAAVCTLDMVRSALERATAGRSAAAAAARGSPATS 141
>02_05_0068 - 25569066-25569311
Length = 81
Score = 29.1 bits (62), Expect = 6.9
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 35 SALVAAQRACCQGSRVQRARPNMLAGVAWARCAGRRRPATSLGLWTGRATDVTR 196
+A+VAA A R +L G+ W AG RR + G W G D R
Sbjct: 2 AAVVAAVEAGVVAVARGRGSGRLLRGIYWRLRAGIRRMQSERGRWRGGRRDHAR 55
>01_06_1440 +
37378121-37378958,37379344-37379494,37379567-37379936,
37380021-37380431,37380522-37380820,37380897-37381155,
37381248-37381497,37381744-37381875,37381936-37382208,
37383023-37383267
Length = 1075
Score = 29.1 bits (62), Expect = 6.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 142 PPAGAPGPRDPSQHVGAGALHAGPLATGP 56
PPAG PR + VGAG P++ GP
Sbjct: 833 PPAGPVQPRPRAPTVGAGPRPTAPISHGP 861
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,093,969
Number of Sequences: 37544
Number of extensions: 397528
Number of successful extensions: 1264
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3491481604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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