Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_B02
(1148 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 30 2.7
U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. 29 4.7
AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (sp... 29 4.7
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 6.2
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 6.2
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 6.2
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 6.2
AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen prot... 29 8.2
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 31.5 bits (68), Expect = 1.2
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 157 RRRWTP-PAGAPGPRDPSQHVGAGALHAGPLATGP 56
R R TP PAGAPGP+ P+ G G A GP
Sbjct: 196 RSRGTPGPAGAPGPQGPAGGPGQPGQSGGAGAPGP 230
Score = 29.1 bits (62), Expect = 6.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 133 GAPGPRDPSQHVGAGALHAGPLATGP 56
GAPGP+ PS G A+ GP GP
Sbjct: 143 GAPGPQGPSGAPGQDAVGEGPGPAGP 168
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 30.3 bits (65), Expect = 2.7
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 157 RRRWTP-PAGAPGPRDPSQHVGAGALHAGPLATGP 56
R R TP P+GAPGP+ P+ G G A GP
Sbjct: 196 RSRGTPGPSGAPGPQGPAGGPGQPGQSGGAGAPGP 230
Score = 29.5 bits (63), Expect = 4.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 133 GAPGPRDPSQHVGAGALHAGPLATGP 56
GAPGP+ PS G A+ GP GP
Sbjct: 143 GAPGPQGPSGAPGQDAVGGGPGPAGP 168
>U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein.
Length = 655
Score = 29.5 bits (63), Expect = 4.7
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 64 LPGVPRATRPP-QHVGWGRVGPVRRPAASSDVARPLDW 174
+PG+P PP + + +G P +RP D+ DW
Sbjct: 525 MPGMPNQALPPIRQMDFGGGPPAKRPRTEDDLIPEADW 562
>AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 21 protein.
Length = 655
Score = 29.5 bits (63), Expect = 4.7
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 64 LPGVPRATRPP-QHVGWGRVGPVRRPAASSDVARPLDW 174
+PG+P PP + + +G P +RP D+ DW
Sbjct: 525 MPGMPNQALPPIRQMDFGGGPPAKRPRTEDDLIPEADW 562
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.1 bits (62), Expect = 6.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 139 PAGAPGPRDPSQHVGAGALHAGPLATGP 56
PAG PGP P + G+ A +GP GP
Sbjct: 160 PAGPPGPPGPDGNPGSPAGPSGPGPAGP 187
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.1 bits (62), Expect = 6.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 139 PAGAPGPRDPSQHVGAGALHAGPLATGP 56
PAG PGP P + G+ A +GP GP
Sbjct: 160 PAGPPGPPGPDGNPGSPAGPSGPGPAGP 187
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.1 bits (62), Expect = 6.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 139 PAGAPGPRDPSQHVGAGALHAGPLATGP 56
PAG PGP P + G+ A +GP GP
Sbjct: 160 PAGPPGPPGPDGNPGSPAGPSGPGPAGP 187
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.1 bits (62), Expect = 6.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 139 PAGAPGPRDPSQHVGAGALHAGPLATGP 56
PAG PGP P + G+ A +GP GP
Sbjct: 160 PAGPPGPPGPDGNPGSPAGPSGPGPAGP 187
>AF067607-9|AAF98609.1| 460|Caenorhabditis elegans Collagen protein
102 protein.
Length = 460
Score = 28.7 bits (61), Expect = 8.2
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -2
Query: 139 PAGAPGPRDPSQHVGAGALHAGPLATGP 56
PAG PGP P+ GAG +GP GP
Sbjct: 213 PAGPPGPPGPNGEAGAG---SGPGPEGP 237
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,929,189
Number of Sequences: 27780
Number of extensions: 340272
Number of successful extensions: 1183
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3119902942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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