Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_B01
         (1280 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.26 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   9.7  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 27/106 (25%), Positives = 29/106 (27%)
 Frame = +3

Query: 684  PXKGXLAGFXPXXPPPXXXXKNXPPRXXGGXPRXXXKXPGXFPXXXPPXXXPXSXPGGLP 863
            P     A   P  PPP    ++ P     G        P   P   PP     S P  LP
Sbjct: 378  PLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP-----SAPPSLP 432

Query: 864  GXXPXFXPXGXGGXFPXPPPXXGFXPXXGVGXXPPPXXGXXXXKPP 1001
               P   P G     P PP      P        PP        PP
Sbjct: 433  PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 22/94 (23%), Positives = 24/94 (25%)
 Frame = +1

Query: 721  PPPPXXXXKXPPPGXXGAXPXGXXKXPGXSPXXXPXXXXLXPXXAVYRXPXPPFXLXGXG 900
            PPPP    +  PP   G+        P            L P       P PP      G
Sbjct: 314  PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373

Query: 901  XXSXXPPXGXXXPXXRGXGPPPPXXGGXXXXNPP 1002
                 PP            PPP   G      PP
Sbjct: 374  --RQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 16/50 (32%), Positives = 17/50 (34%)
 Frame = +2

Query: 872  AXLXPXGXXGXXPXXPPXXXXXPXXGGXXXPPPXXGXGXXXTPPVXXPXP 1021
            A + P       P  PP     P  GG   PPP  G      PP   P P
Sbjct: 738  AVIVPTPAPAPIPVPPPA----PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 2.4
 Identities = 17/50 (34%), Positives = 17/50 (34%)
 Frame = +3

Query: 822 PPXXXPXSXPGGLPGXXPXFXPXGXGGXFPXPPPXXGFXPXXGVGXXPPP 971
           PP       P   P   P   P    G  P PPP  G     G G  PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG---VAGAGPPPPP 779



 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/46 (28%), Positives = 15/46 (32%)
 Frame = +2

Query: 677 PXPXKGPVGGXXPXXPPPXXTXXKXPPQVXGGQXPXGFXXSRXFPP 814
           P P   P+ G  P  PPP       PP             SR + P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 900 GXFPXPPPXXGFXPXXGVGXXPPP 971
           G  P PPP  GF P       PPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 30/141 (21%), Positives = 30/141 (21%)
 Frame = +2

Query: 695  PVGGXXPXXPPPXXTXXKXPPQVXGGQXPXGFXXSRXFPPGXXPXGXPXFRXXRFTGXLA 874
            PV       PP        PP       P     S   PP   P G P            
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPV 1152

Query: 875  XLXPXGXXGXXPXXPPXXXXXPXXGGXXXPPPXXGXGXXXTPPVXXPXPXXPFXXXXXXX 1054
                       P         P  G    P P  G      PPV  P    P        
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAG-----VPPVPPPSEAPPVPKPSVGV 1207

Query: 1055 XEXPPPGKXXXFXPPXGXXPP 1117
               PPP        P    PP
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLPP 1228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,650
Number of Sequences: 5004
Number of extensions: 40141
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)