Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_A24
         (1170 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    45   2e-05
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   8.8  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    26   8.8  

>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 1/127 (0%)
 Frame = +2

Query: 146 HEDMINDAEXDYYGLKXAXMXXX*XTENIXN*XWYRXIGC*YEGS*MXPCGK*LGLIPSM 325
           H+DMI+DA  DYYG + A       T  + +    +            P  +     P  
Sbjct: 8   HDDMIHDAILDYYGKRLATCSSD-QTIKVFSIENNQQTLLETLRGHSGPVWQLGWAHPKF 66

Query: 326 GTYXRHXSYXRKVIIWKXSGKXXKQ-X*XXGXEXXXNSXAWEXGEYXLILXCCXSHGXIS 502
           GT     SY   VI+W+ +G    +       +   N+ +W   EY  +L C  S G +S
Sbjct: 67  GTILASASYDGHVIVWRETGGVWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVS 126

Query: 503 IIQYSXD 523
           ++++  D
Sbjct: 127 VLEFKDD 133



 Score = 32.3 bits (70), Expect = 0.13
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 283 NGPVWKVARAHPKYGNLXAS 342
           +GPVW++  AHPK+G + AS
Sbjct: 53  SGPVWQLGWAHPKFGTILAS 72


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 592 YXTNXIHINGMCTXYLFYXPI 530
           Y  N + ING CT Y+ + P+
Sbjct: 241 YRGNFVTINGPCTTYMHWTPL 261


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 243 NGTEXLAADMKGHKWXRVESS*GSS 317
           N TE L  D KG  W R  S+ GSS
Sbjct: 240 NDTESLQVDTKGSVWFRDVSNMGSS 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,592,736
Number of Sequences: 5004
Number of extensions: 16414
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 627537330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)