Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_A24
         (1170 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0972 - 8176013-8176960                                           53   4e-07
03_06_0560 + 34726338-34727243                                         48   1e-05
02_01_0283 + 1903869-1904786                                           48   1e-05

>07_01_0972 - 8176013-8176960
          Length = 315

 Score = 53.2 bits (122), Expect = 4e-07
 Identities = 45/151 (29%), Positives = 59/151 (39%), Gaps = 4/151 (2%)
 Frame = +2

Query: 146 HEDMINDAEXDYYG--LKXAXMXXX*XTENIXN*XWYRXIGC*YEGS*MXPCGK*LGLIP 319
           H+DM++D+  DYYG  L  A         +I        +     G    P  +     P
Sbjct: 10  HKDMVHDSAIDYYGKRLATASSDSTVKISSIGGKSAPSQLLATLSGH-YGPVWRVAWAHP 68

Query: 320 SMGTYXRHXSYXRKVIIWKXS--GKXXKQX*XXGXEXXXNSXAWEXGEYXLILXCCXSHG 493
             GT     SY  +VIIWK    G   +       +   NS AW   E  L L C  S G
Sbjct: 69  KYGTILASCSYDGRVIIWKEGAGGHWSQAHVFTDHKSSVNSIAWAPYEVGLCLACGSSDG 128

Query: 494 XISIIQYSXDXGNWXVKKIXGAHAIDVNXIS 586
            IS++    D G W   +I  AH + V  IS
Sbjct: 129 TISVMTMRAD-GGWDTARIERAHPVGVTAIS 158



 Score = 36.7 bits (81), Expect = 0.035
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +1

Query: 286 GPVWKVARAHPKYGNLXAS 342
           GPVW+VA AHPKYG + AS
Sbjct: 58  GPVWRVAWAHPKYGTILAS 76


>03_06_0560 + 34726338-34727243
          Length = 301

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 40/151 (26%), Positives = 59/151 (39%), Gaps = 4/151 (2%)
 Frame = +2

Query: 146 HEDMINDAEXDYYG--LKXAXMXXX*XTENIXN*XWYRXIGC*YEGS*MXPCGK*LGLIP 319
           H+DM++D+  DYYG  L  A         +I        +     G    P  +     P
Sbjct: 10  HKDMVHDSAIDYYGKSLATASSDSTVQISSIGGASAPSQLLATLSGH-YGPVWRVAWAHP 68

Query: 320 SMGTYXRHXSYXRKVIIWKX--SGKXXKQX*XXGXEXXXNSXAWEXGEYXLILXCCXSHG 493
             G+      Y  +V++WK   +G+  +       +   NS AW   E  L L C  S G
Sbjct: 69  KFGSILASCGYDGRVVVWKEGAAGQWSQAHVFDNHKSSLNSIAWAPYELGLCLACGSSDG 128

Query: 494 XISIIQYSXDXGNWXVKKIXGAHAIDVNXIS 586
            IS++    D G W    I  AH + V  +S
Sbjct: 129 SISVMTMRPD-GGWDSTTIEQAHPVGVMAVS 158



 Score = 35.5 bits (78), Expect = 0.081
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +1

Query: 286 GPVWKVARAHPKYGNLXAS 342
           GPVW+VA AHPK+G++ AS
Sbjct: 58  GPVWRVAWAHPKFGSILAS 76


>02_01_0283 + 1903869-1904786
          Length = 305

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 41/150 (27%), Positives = 55/150 (36%), Gaps = 3/150 (2%)
 Frame = +2

Query: 146 HEDMINDAEXDYYGLKXAXMXXX*XTENIXN*XWYRXIGC*YEGS*MXPCGK*LGLIPSM 325
           H+D+++D   DYYG + A       T  I                   P  +     P  
Sbjct: 10  HQDVVHDIAMDYYGKRIATASSD-NTIKIIGVSGNSHQQLATLSGHQGPVWQVAWAHPKY 68

Query: 326 GTYXRHXSYXRKVIIWKXSGKXXK---QX*XXGXEXXXNSXAWEXGEYXLILXCCXSHGX 496
           G+     SY  +VIIWK   K  +          +   NS AW   E  L L C  S G 
Sbjct: 69  GSLLASCSYDGRVIIWKEGSKPDEWAQAHTFIEHKSSVNSIAWAPHELGLCLACGSSDGN 128

Query: 497 ISIIQYSXDXGNWXVKKIXGAHAIDVNXIS 586
           IS+     D G W   +I  AH + V  +S
Sbjct: 129 ISVFTARSD-GGWDTTRIDQAHPVGVTSVS 157



 Score = 37.5 bits (83), Expect = 0.020
 Identities = 15/19 (78%), Positives = 17/19 (89%)
 Frame = +1

Query: 286 GPVWKVARAHPKYGNLXAS 342
           GPVW+VA AHPKYG+L AS
Sbjct: 56  GPVWQVAWAHPKYGSLLAS 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,504,293
Number of Sequences: 37544
Number of extensions: 95138
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3573221976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)