Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_A24
         (1170 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore...    45   9e-05
AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore...    45   9e-05

>AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform b protein.
          Length = 211

 Score = 45.2 bits (102), Expect = 9e-05
 Identities = 39/151 (25%), Positives = 58/151 (38%), Gaps = 5/151 (3%)
 Frame = +2

Query: 146 HEDMINDAEXDYYGLKXAXMXXX*XTENIXN*XWYRXIGC*YEGS*MX----PCGK*LGL 313
           H D I+DA+ + YG + A       ++ +      R  G  Y  + +     P  K    
Sbjct: 12  HRDAIHDAQLNIYGSRLATCG----SDRLVKIFEVRPNGQSYPMAELVGHSGPVWKVSWA 67

Query: 314 IPSMGTYXRHXSYXRKVIIW-KXSGKXXKQX*XXGXEXXXNSXAWEXGEYXLILXCCXSH 490
            P  G      SY +KVIIW +  G+  K       E      A+   +Y L+L    + 
Sbjct: 68  HPKYGGLLASASYDKKVIIWNEQQGRWQKAYEWAAHEASTTCVAFAPHQYGLMLASASAD 127

Query: 491 GXISIIQYSXDXGNWXVKKIXGAHAIDVNXI 583
           G I I++Y      W   KI   H   VN +
Sbjct: 128 GDIGILRYDNSSNEWISSKIQKCHEQGVNSV 158



 Score = 37.9 bits (84), Expect = 0.014
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +1

Query: 283 NGPVWKVARAHPKYGNLXAS 342
           +GPVWKV+ AHPKYG L AS
Sbjct: 58  SGPVWKVSWAHPKYGGLLAS 77


>AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform a protein.
          Length = 313

 Score = 45.2 bits (102), Expect = 9e-05
 Identities = 39/151 (25%), Positives = 58/151 (38%), Gaps = 5/151 (3%)
 Frame = +2

Query: 146 HEDMINDAEXDYYGLKXAXMXXX*XTENIXN*XWYRXIGC*YEGS*MX----PCGK*LGL 313
           H D I+DA+ + YG + A       ++ +      R  G  Y  + +     P  K    
Sbjct: 12  HRDAIHDAQLNIYGSRLATCG----SDRLVKIFEVRPNGQSYPMAELVGHSGPVWKVSWA 67

Query: 314 IPSMGTYXRHXSYXRKVIIW-KXSGKXXKQX*XXGXEXXXNSXAWEXGEYXLILXCCXSH 490
            P  G      SY +KVIIW +  G+  K       E      A+   +Y L+L    + 
Sbjct: 68  HPKYGGLLASASYDKKVIIWNEQQGRWQKAYEWAAHEASTTCVAFAPHQYGLMLASASAD 127

Query: 491 GXISIIQYSXDXGNWXVKKIXGAHAIDVNXI 583
           G I I++Y      W   KI   H   VN +
Sbjct: 128 GDIGILRYDNSSNEWISSKIQKCHEQGVNSV 158



 Score = 37.9 bits (84), Expect = 0.014
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +1

Query: 283 NGPVWKVARAHPKYGNLXAS 342
           +GPVWKV+ AHPKYG L AS
Sbjct: 58  SGPVWKVSWAHPKYGGLLAS 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,513,418
Number of Sequences: 27780
Number of extensions: 86973
Number of successful extensions: 91
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3192944148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)