Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_A23
         (1399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    33   0.64 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    33   0.64 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    33   0.64 
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr...    32   0.84 

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform b protein.
          Length = 518

 Score = 32.7 bits (71), Expect = 0.64
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +2

Query: 1169 PXRXPPXXSPXPKXXXPXTXSXTPPXPXKAHKPXPP 1276
            P    P   P PK   P   S +PP P  A  P PP
Sbjct: 232  PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPP 267



 Score = 29.1 bits (62), Expect = 7.9
 Identities = 18/61 (29%), Positives = 21/61 (34%)
 Frame = +2

Query: 1112 PXX*GAXPGPGXGFFXTXXPXRXPPXXSPXPKXXXPXTXSXTPPXPXKAHKPXPPXQNXR 1291
            P   G+ P P  G      P   PP  SP      P     +PP       P PP Q  +
Sbjct: 283  PPAGGSPPPPRAG----SPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 338

Query: 1292 A 1294
            A
Sbjct: 339  A 339


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform c protein.
          Length = 539

 Score = 32.7 bits (71), Expect = 0.64
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +2

Query: 1169 PXRXPPXXSPXPKXXXPXTXSXTPPXPXKAHKPXPP 1276
            P    P   P PK   P   S +PP P  A  P PP
Sbjct: 253  PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPP 288



 Score = 29.1 bits (62), Expect = 7.9
 Identities = 18/61 (29%), Positives = 21/61 (34%)
 Frame = +2

Query: 1112 PXX*GAXPGPGXGFFXTXXPXRXPPXXSPXPKXXXPXTXSXTPPXPXKAHKPXPPXQNXR 1291
            P   G+ P P  G      P   PP  SP      P     +PP       P PP Q  +
Sbjct: 304  PPAGGSPPPPRAG----SPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 359

Query: 1292 A 1294
            A
Sbjct: 360  A 360


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform a protein.
          Length = 524

 Score = 32.7 bits (71), Expect = 0.64
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +2

Query: 1169 PXRXPPXXSPXPKXXXPXTXSXTPPXPXKAHKPXPP 1276
            P    P   P PK   P   S +PP P  A  P PP
Sbjct: 238  PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPP 273



 Score = 29.1 bits (62), Expect = 7.9
 Identities = 18/61 (29%), Positives = 21/61 (34%)
 Frame = +2

Query: 1112 PXX*GAXPGPGXGFFXTXXPXRXPPXXSPXPKXXXPXTXSXTPPXPXKAHKPXPPXQNXR 1291
            P   G+ P P  G      P   PP  SP      P     +PP       P PP Q  +
Sbjct: 289  PPAGGSPPPPRAG----SPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQ 344

Query: 1292 A 1294
            A
Sbjct: 345  A 345


>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical protein
            C27H6.1 protein.
          Length = 1657

 Score = 32.3 bits (70), Expect = 0.84
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +2

Query: 1160 TXXPXRXPPXXSPXPKXXXPXTXSXTPPXPXKAHKPXPP 1276
            T  P R PP     PK       +  PP P  A +P PP
Sbjct: 683  TSAPARPPPARPEAPKKDETAVDAAAPPRPPPAARPPPP 721


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,485,515
Number of Sequences: 27780
Number of extensions: 164025
Number of successful extensions: 287
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3964944318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)