Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_A22
         (1183 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   364   e-101
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   357   2e-99
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   201   2e-52
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...   146   5e-36
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    34   0.044

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  364 bits (895), Expect = e-101
 Identities = 164/240 (68%), Positives = 196/240 (81%)
 Frame = +3

Query: 228 HGIQPXGQLPTXKPIGGGAXSFNTFFSXPGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLF 407
           HGIQP G +            F+TFFS  G GK+VPR+++VDLEP V+D+VRTG YR LF
Sbjct: 28  HGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLF 87

Query: 408 HPEQLITGKEXAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXX 587
           HPEQLITGKE A+NNYARGHYT+GKE+VD V D+IR++AD C+GLQGFL+FH        
Sbjct: 88  HPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGS 147

Query: 588 XXXXLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNE 767
               LL+ERL+++Y KKSKL+F++YPAPQVST+VVEPYNS+LTTH TL+ +DC FMVDNE
Sbjct: 148 GFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNE 207

Query: 768 AIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHF 947
           + YDICRRNLDIERP+Y NLNRLI Q+VSSITASLRF+G+LNVDL EFQTNLVPYPRIHF
Sbjct: 208 SCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHF 267



 Score = 44.0 bits (99), Expect = 4e-05
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +2

Query: 167 HVGQAGVQLGNACWALYCL 223
           HVGQAG Q+GNACW LYCL
Sbjct: 8   HVGQAGTQIGNACWELYCL 26


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  357 bits (878), Expect = 2e-99
 Identities = 158/219 (72%), Positives = 188/219 (85%)
 Frame = +3

Query: 291 FNTFFSXPGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEXAANNYARGHY 470
           F TFFS  G GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKE A+NNYARGHY
Sbjct: 53  FGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHY 112

Query: 471 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLE 650
           T+GKE++D VL+RIR++AD C+GLQGFL+FH            LL+ERL+++YGKKS L+
Sbjct: 113 TVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQ 172

Query: 651 FAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLN 830
           F++YPAPQVST+VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNLDIERPTY NLN
Sbjct: 173 FSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLN 232

Query: 831 RLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHF 947
           RLI Q+VSSITASLRF G+LNVDL EFQTNLVPYPRIHF
Sbjct: 233 RLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHF 271



 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +2

Query: 167 HVGQAGVQLGNACWALYCL 223
           HVGQAGVQ+GNACW LYCL
Sbjct: 8   HVGQAGVQIGNACWELYCL 26


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  201 bits (490), Expect = 2e-52
 Identities = 91/218 (41%), Positives = 134/218 (61%)
 Frame = +3

Query: 294 NTFFSXPGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEXAANNYARGHYT 473
           N +F+    GK+VPRAV VDLEP  +D V++G +  LF P+ +I G+  A N +A+GHYT
Sbjct: 48  NVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYT 107

Query: 474 IGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEF 653
            G E+ D VLD +R+ A+ C  LQGF + H            LL+ ++  +Y  +    F
Sbjct: 108 EGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATF 167

Query: 654 AIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNR 833
           ++ PAP+ S  VVEPYN+ L+ H  +E+SD  F +DNEA+  I    L I+ P+Y +LN 
Sbjct: 168 SVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNH 227

Query: 834 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHF 947
           L+  +++ +T S RF G LN DL +   N+VP+PR+HF
Sbjct: 228 LVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHF 265


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score =  146 bits (354), Expect = 5e-36
 Identities = 81/243 (33%), Positives = 129/243 (53%), Gaps = 3/243 (1%)
 Frame = +3

Query: 228 HGIQPXGQLPTXKPIGGGAXSFNTFFSXPGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLF 407
           HGI P G L +      G    + FF      +++PRA+ +DLEP VV+ + + TY  L+
Sbjct: 29  HGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLY 86

Query: 408 HPEQLITGKEX--AANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXX 581
           +PE ++  K    A NN+A G Y+  + I + ++D I + AD    L+GF + H      
Sbjct: 87  NPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGT 145

Query: 582 XXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ-VSTAVVEPYNSILTTHTTLEHSDCAFMV 758
                  L+ERL+  Y KK    ++++P  Q VS  VV+PYNS+L       ++D   ++
Sbjct: 146 GSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVL 205

Query: 759 DNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPR 938
           DN A+  I    L  + PT+   N+L+  ++S+ T +LR+ G +N DL     +L+P PR
Sbjct: 206 DNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPR 265

Query: 939 IHF 947
            HF
Sbjct: 266 CHF 268


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 33.9 bits (74), Expect = 0.044
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = -3

Query: 929 RHQVSLELGEVHIQSAVESQRSSDRGDNLSDETIQVGVGWALNVEITAADVIDG 768
           R  +  E  + H  ++ + Q+SSD  ++ +D T  VG+G AL   I + D +DG
Sbjct: 165 RRVLQAERAKEHRSNSNDKQKSSDNDEDPNDTT--VGIGAALAASILSVDSVDG 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,814,283
Number of Sequences: 5004
Number of extensions: 69862
Number of successful extensions: 200
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)