Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_A20
         (1222 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0875 - 23920023-23920967,23921045-23921599,23921678-239220...    29   7.4  
08_01_0998 - 10136050-10138356                                         29   9.8  
06_03_1237 + 28602250-28604196                                         29   9.8  

>12_02_0875 -
           23920023-23920967,23921045-23921599,23921678-23922083,
           23922175-23922452
          Length = 727

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +1

Query: 643 DLLYREIPRRVFHTDTR*HGGITDQVHAQRLSLPHRSAQDRLIA 774
           D   RE  RR  +   R HGG+      +RLS  H+S QD   A
Sbjct: 437 DAKLREDSRRRVNVGGRNHGGVGGGEATKRLSRGHKSMQDTTAA 480


>08_01_0998 - 10136050-10138356
          Length = 768

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 124 GVLADDFSQITAVVTSQCTKNNAEDKVPXS*SSIAYLWKLPQGTGRF 264
           GV+  +   +TA+ T     N  E +VP S SS+  L+ L     RF
Sbjct: 298 GVIPPEIFNLTALRTIDVGTNRLEGEVPASISSLRNLYGLDLSNNRF 344


>06_03_1237 + 28602250-28604196
          Length = 648

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 231 VRNAASTXRDFVFSIVLGALRGHNRCNLTKVISQH 127
           VR+ + T    V+  +LGA R H +  + KV+++H
Sbjct: 435 VRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEH 469


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,379,357
Number of Sequences: 37544
Number of extensions: 441759
Number of successful extensions: 1201
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3747967944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)