Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_A19
(1187 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 204 2e-53
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 106 5e-24
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 89 8e-19
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 58 2e-09
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 55 2e-08
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 46 1e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 46 1e-05
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.31
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.72
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 2.2
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 5.1
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 27 6.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 6.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 204 bits (498), Expect = 2e-53
Identities = 91/99 (91%), Positives = 95/99 (95%)
Frame = +2
Query: 707 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 886
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 887 RGILTLKYPIEHGIVTNWDDMEKIXHHTFYNELXVAPEE 1003
RGILTLKYPIEHGIV NWDDMEKI HHTFYNEL VAPEE
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEE 100
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 996 PKKNPVLXTEXPLNPKA 1046
P+++P L TE PLNPK+
Sbjct: 98 PEEHPCLLTEAPLNPKS 114
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 379
Score = 106 bits (255), Expect = 5e-24
Identities = 48/94 (51%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Frame = +2
Query: 725 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 904
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 905 KYPIEHGIVTNWDDMEKIXHHTFYN-ELXVAPEE 1003
+ PIE GI+ NW DME+I + + + +L PEE
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEE 105
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 89.4 bits (212), Expect = 8e-19
Identities = 42/97 (43%), Positives = 66/97 (68%), Gaps = 2/97 (2%)
Frame = +2
Query: 713 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 886
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 887 RGILTLKYPIEHGIVTNWDDMEKIXHHTFYNELXVAP 997
R +L +KYP+E+GI+ ++++M ++ +TF+ +L + P
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDP 98
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 58.0 bits (134), Expect = 2e-09
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 24/117 (20%)
Frame = +2
Query: 725 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 853
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 854 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIXHHTFYNELXVAPEE 1003
D ++G++A K +L YPI HG + NWD ME+ + + L PE+
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPED 123
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 54.8 bits (126), Expect = 2e-08
Identities = 27/84 (32%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +2
Query: 725 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 904
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 905 -KYPIEHGIVTNWDDMEKIXHHTF 973
+ P E +++NWD ME++ +TF
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTF 106
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 45.6 bits (103), Expect = 1e-05
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Frame = +2
Query: 710 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 889
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 890 GI--LTLKYPIEHGIVTNWDDMEKIXHHTFYNELXVAPEE 1003
I + +K +GI+ +W+ +L V P E
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTE 101
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 45.6 bits (103), Expect = 1e-05
Identities = 30/98 (30%), Positives = 48/98 (48%)
Frame = +2
Query: 710 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 889
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 890 GILTLKYPIEHGIVTNWDDMEKIXHHTFYNELXVAPEE 1003
G + +K I +G V NWD + + +L P E
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLE 98
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.31
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 770 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 913
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.72
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 867 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 706
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 878 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 789
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 5.1
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -2
Query: 907 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 728
F G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 26.6 bits (56), Expect = 6.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 637 EAL*LIPY*HRSCGQVTHALLTNKYASGRIANRN 536
E L + P ++CG+ A LTN A+G + N N
Sbjct: 1427 EMLTINPPSGQTCGEYMSAFLTNNTAAGNLLNPN 1460
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 6.8
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 870 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 754
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,815,906
Number of Sequences: 5004
Number of extensions: 73301
Number of successful extensions: 175
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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