Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_A18
         (1272 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC105003-1|AAI05004.1|  802|Homo sapiens neuronal PAS domain pro...    31   8.9  
BC105001-1|AAI05002.1|  802|Homo sapiens HLH-PAS transcription f...    31   8.9  
AK096253-1|BAC04738.1|  802|Homo sapiens protein ( Homo sapiens ...    31   8.9  
AB049469-1|BAC19830.1|  802|Homo sapiens HLH-PAS transcription f...    31   8.9  

>BC105003-1|AAI05004.1|  802|Homo sapiens neuronal PAS domain
           protein 4 protein.
          Length = 802

 Score = 31.1 bits (67), Expect = 8.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 190 GGDAPELXGPGTADAPLXPLAPEEHAAL 107
           G   PE  GPG A +P   L+PE+H+ L
Sbjct: 727 GSGDPEAEGPGGAPSPCNNLSPEDHSFL 754


>BC105001-1|AAI05002.1|  802|Homo sapiens HLH-PAS transcription
           factor NXF protein.
          Length = 802

 Score = 31.1 bits (67), Expect = 8.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 190 GGDAPELXGPGTADAPLXPLAPEEHAAL 107
           G   PE  GPG A +P   L+PE+H+ L
Sbjct: 727 GSGDPEAEGPGGAPSPCNNLSPEDHSFL 754


>AK096253-1|BAC04738.1|  802|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38934 fis, clone NT2NE2014221. ).
          Length = 802

 Score = 31.1 bits (67), Expect = 8.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 190 GGDAPELXGPGTADAPLXPLAPEEHAAL 107
           G   PE  GPG A +P   L+PE+H+ L
Sbjct: 727 GSGDPEAEGPGGAPSPCNNLSPEDHSFL 754


>AB049469-1|BAC19830.1|  802|Homo sapiens HLH-PAS transcription
           factor NXF protein.
          Length = 802

 Score = 31.1 bits (67), Expect = 8.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 190 GGDAPELXGPGTADAPLXPLAPEEHAAL 107
           G   PE  GPG A +P   L+PE+H+ L
Sbjct: 727 GSGDPEAEGPGGAPSPCNNLSPEDHSFL 754


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,015,449
Number of Sequences: 237096
Number of extensions: 519681
Number of successful extensions: 1299
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 18220302130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)