Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_A17
         (1197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.24 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 19/68 (27%), Positives = 21/68 (30%)
 Frame = +2

Query: 704 PXXPPXKPPXXPXXSPPCXXRKTXPXFPLXXGGXXXXXXPXGFXXGVXATPPXGAXCKTP 883
           P  PP  PP  P  +PP          PL          P     G+ A PP       P
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP----AGMPAAPPLPPAAPAP 476

Query: 884 PLXPTGGP 907
           P  P   P
Sbjct: 477 PPAPAPAP 484



 Score = 26.6 bits (56), Expect = 6.8
 Identities = 37/172 (21%), Positives = 47/172 (27%), Gaps = 4/172 (2%)
 Frame = +3

Query: 435 PSXSPPXXPXXPGXXGGGXGFXPXXGGKXVTXKIXXNPXKKXXTKXPQKGXXPKKGXXX- 611
           PS S P  P  P    G     P    + +   +  NP     +K P      +      
Sbjct: 246 PSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAP-VSMNPAINSTSKPPLPPPSSRVSAAAL 304

Query: 612 ---GFXPKAPPP*KXXKKSTPNXXXAXPXGXKKTPXXPPXNPPXAXXFPXPAXXGKPXPX 782
                 P  PPP     +  P      P G   +    P  PP     P  +      P 
Sbjct: 305 AANKKRPPPPPPPSRRNRGKP------PIGNGSSNSSLPPPPP-----PPRSNAAGSIPL 353

Query: 783 SPXGKGGXXXXPXRXVSXGGXGXPPQXGLXAKPPR*XXPGALTGXXXFXXPP 938
            P G+      P R     G   PP     A       P A+ G      PP
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 24/74 (32%), Positives = 25/74 (33%)
 Frame = -1

Query: 801 PPXXRGKXGQVFRXXQGGEXXGXXGGFXGGXLGFFXSRGXLPPXNWGWIFXKXFRGGGPL 622
           PP   G  G        G   G  GGF GG  GF    G       G+       GGGP 
Sbjct: 200 PPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPG 259

Query: 621 GKXXXXGPFXXXGP 580
           G     GP    GP
Sbjct: 260 G--FGGGPGGHGGP 271


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = +3

Query: 717 PXNPPXAXXFPXPAXXGKPXPXSPXGKGGXXXXPXRXVSXGGXGXPP 857
           P  PP A   P PA    P P      GG    P       G G PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP-PPGVAGAGPPP 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,708
Number of Sequences: 5004
Number of extensions: 21858
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 645466968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)