Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_A17
(1197 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0568 + 4973031-4973161,4973514-4974321,4974394-4974690 44 2e-04
02_05_0686 - 30900748-30902167,30903442-30904742 40 0.003
07_03_1136 + 24218601-24218734,24218769-24219906 35 0.11
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 35 0.11
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 33 0.44
01_01_0715 - 5542648-5543219,5543352-5543544 33 0.59
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 32 0.78
07_01_0479 + 3606663-3607448 32 1.0
04_04_1126 + 31095651-31096115 31 2.4
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776 31 2.4
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 30 3.1
06_02_0122 - 12095385-12095713,12096018-12096120 30 3.1
02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312... 25 3.8
06_02_0123 + 12104187-12104252,12105455-12105775 30 4.1
12_02_1174 - 26696869-26698191 29 5.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 5.5
12_01_0526 - 4171313-4171417,4171514-4171597,4171688-4171758,417... 29 7.2
11_06_0610 - 25449085-25453284 29 7.2
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 29 9.6
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 29 9.6
>05_01_0568 + 4973031-4973161,4973514-4974321,4974394-4974690
Length = 411
Score = 44.0 bits (99), Expect = 2e-04
Identities = 33/103 (32%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
Frame = -1
Query: 807 KXPPXXRGKXGQVFRXXQGGEXXGXXGGFXGGXLGFFXSRGX--LPPXNWGWIFXKXFRG 634
+ P G+ G VF + G GF GG F RG P G +F F G
Sbjct: 136 RGPVFAAGRGGPVFAPGRRGPVFA--AGFHGGGPVFAAGRGGPVFAPGRRGPVFAAGFHG 193
Query: 633 GGPLGKXXXXGPFXXXGPFGAXWLXXFXWGXPXF---XGXPVF 514
GGP+ GP G G + F G P F G PVF
Sbjct: 194 GGPVFAAGRGGPVFAPGRRGPVFAAGFHGGGPVFAAGRGGPVF 236
Score = 43.6 bits (98), Expect = 3e-04
Identities = 33/101 (32%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
Frame = -1
Query: 801 PPXXRGKXGQVFRXXQGGEXXGXXGGFXGGXLGFFXSRGX--LPPXNWGWIFXKXFRGGG 628
P G+ G VF + G GF GG F RG P G +F F GGG
Sbjct: 167 PVFAAGRGGPVFAPGRRGPVFA--AGFHGGGPVFAAGRGGPVFAPGRRGPVFAAGFHGGG 224
Query: 627 PLGKXXXXGPFXXXGPFGAXWLXXFXWGXPXF---XGXPVF 514
P+ GP G G + F G P F G PVF
Sbjct: 225 PVFAAGRGGPVFAPGRRGPVFAAGFHGGGPVFAAGRGGPVF 265
Score = 35.1 bits (77), Expect = 0.11
Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Frame = -1
Query: 801 PPXXRGKXGQVFRXXQGGEXXGXXGGFXGGXLGFFXSRGX--LPPXNWGWIFXKXFRGGG 628
P G+ G VF + G GF GG F RG P G +F F GGG
Sbjct: 196 PVFAAGRGGPVFAPGRRGPVFA--AGFHGGGPVFAAGRGGPVFAPGRRGPVFAAGFHGGG 253
Query: 627 PLGKXXXXGPFXXXGPFG 574
P+ GP G G
Sbjct: 254 PVFAAGRGGPVFAAGLHG 271
Score = 34.7 bits (76), Expect = 0.15
Identities = 28/101 (27%), Positives = 34/101 (33%), Gaps = 3/101 (2%)
Frame = -1
Query: 807 KXPPXXRGKXGQVFRXXQGGEXXGXXGGFXGGXLGFFXSRGXLPPXNWGWIFXKXFRGGG 628
+ P G+ G VF + G G G P G +F F GGG
Sbjct: 109 RGPLFAAGRRGPVFAAGRRGPLFA--AGRRGPVFAAGRGGPVFAPGRRGPVFAAGFHGGG 166
Query: 627 PLGKXXXXGPFXXXGPFGAXWLXXFXWGXPXF---XGXPVF 514
P+ GP G G + F G P F G PVF
Sbjct: 167 PVFAAGRGGPVFAPGRRGPVFAAGFHGGGPVFAAGRGGPVF 207
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 40.3 bits (90), Expect = 0.003
Identities = 31/98 (31%), Positives = 34/98 (34%)
Frame = +3
Query: 621 PKAPPP*KXXKKSTPNXXXAXPXGXKKTPXXPPXNPPXAXXFPXPAXXGKPXPXSPXGKG 800
P PPP K + P P P PP PP P P G P P P G
Sbjct: 313 PPPPPPPKPAAAAPP----PPPPPKAAPPPPPPKGPP-----PPPPAKGPPPPPPPKGPS 363
Query: 801 GXXXXPXRXVSXGGXGXPPQXGLXAKPPR*XXPGALTG 914
P GG PP G ++PP PG TG
Sbjct: 364 PPPPPPPGG-KKGGPPPPPPKGGASRPP--AAPGVPTG 398
Score = 32.7 bits (71), Expect = 0.59
Identities = 27/98 (27%), Positives = 28/98 (28%)
Frame = +3
Query: 621 PKAPPP*KXXKKSTPNXXXAXPXGXKKTPXXPPXNPPXAXXFPXPAXXGKPXPXSPXGKG 800
P P P S P A P PP P A P P P P P G
Sbjct: 286 PSLPLPPGRESPSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKG-- 343
Query: 801 GXXXXPXRXVSXGGXGXPPQXGLXAKPPR*XXPGALTG 914
P + G PP G PP PG G
Sbjct: 344 ----PPPPPPAKGPPPPPPPKGPSPPPP--PPPGGKKG 375
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 35.1 bits (77), Expect = 0.11
Identities = 22/70 (31%), Positives = 24/70 (34%)
Frame = -3
Query: 913 PVRAPGXX*RGGFAXSPXWGGXPHPPXETXRXGXXXXPPXPKGEXGXGFPXXAGXGXXXA 734
P++ G GG A P GG PP G PP G G P G G A
Sbjct: 84 PIKLLGLPPGGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGA 143
Query: 733 XGGFXGGXXG 704
GG G
Sbjct: 144 PRRVLGGGGG 153
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 35.1 bits (77), Expect = 0.11
Identities = 42/168 (25%), Positives = 44/168 (26%), Gaps = 2/168 (1%)
Frame = +3
Query: 405 PGERGXXXXXPSXSPPXXPXXP-GXXGGGXGFXPXXGGKXVTXKIXXNPXKKXXTKXPQK 581
PGE G PS PP G GG P + P P
Sbjct: 1053 PGEVGGAPSPPSPPPPQRENTSVGIQGGIPPLPPPLPPTLGDYGVAPPPPSIGAGAPPPP 1112
Query: 582 GXXPKKGXXXGFXPKAPPP*KXXKKSTPNXXXAXPXGXKKTPXXPPXNPPXAXXFPXPAX 761
P G G P PPP P G P PP P P
Sbjct: 1113 ---PPPGGITGVPP--PPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPA 1167
Query: 762 XGKPXPXSPXGKGGXXXXPXRXVSXGGXGXPP-QXGLXAKPPR*XXPG 902
+ P GG P GG G PP G A P PG
Sbjct: 1168 GFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPG 1215
Score = 30.3 bits (65), Expect = 3.1
Identities = 21/77 (27%), Positives = 24/77 (31%), Gaps = 4/77 (5%)
Frame = +3
Query: 582 GXXPKKGXXXGFXPKAPPP*KXXKKSTPNXXXAXPXGXKKTPXXP----PXNPPXAXXFP 749
G P GF PPP + P G P P P PP P
Sbjct: 1158 GGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGP 1217
Query: 750 XPAXXGKPXPXSPXGKG 800
P G+ P P G+G
Sbjct: 1218 PPPPGGRGLPAPPGGRG 1234
Score = 29.1 bits (62), Expect = 7.2
Identities = 18/63 (28%), Positives = 18/63 (28%)
Frame = -3
Query: 913 PVRAPGXX*RGGFAXSPXWGGXPHPPXETXRXGXXXXPPXPKGEXGXGFPXXAGXGXXXA 734
P P RGG GG PP G PP P G P G
Sbjct: 1161 PAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPP 1220
Query: 733 XGG 725
GG
Sbjct: 1221 PGG 1223
Score = 28.7 bits (61), Expect = 9.6
Identities = 18/52 (34%), Positives = 19/52 (36%)
Frame = +1
Query: 784 PPXXRGXLXXXPXXXFXXGGXGXPPXXGXXQNPPVXPXRGP*PGKXGLXPPP 939
PP G + P GG G PP PP P PG G PPP
Sbjct: 1175 PPNAHGGVAPPPPPPRGHGGVGGPP------TPPGAPAPPMPPGVPGGPPPP 1220
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 33.1 bits (72), Expect = 0.44
Identities = 27/103 (26%), Positives = 29/103 (28%)
Frame = +3
Query: 666 NXXXAXPXGXKKTPXXPPXNPPXAXXFPXPAXXGKPXPXSPXGKGGXXXXPXRXVSXGGX 845
N A P PP PP P P P P +P G P G
Sbjct: 248 NKPPAAPGTLPNGSGGPPRPPPPQVPPPPPQAPPPPPPNAPMGMPPRIPPPP---VGGTQ 304
Query: 846 GXPPQXGLXAKPPR*XXPGALTGXXXFXXPPRKKKXXPXXXXP 974
PP L PPR P +TG P P P
Sbjct: 305 PPPPPPPLANGPPRSIPPPPMTGGAMANFTPGAPPRPPMQGFP 347
>01_01_0715 - 5542648-5543219,5543352-5543544
Length = 254
Score = 32.7 bits (71), Expect = 0.59
Identities = 26/90 (28%), Positives = 27/90 (30%), Gaps = 1/90 (1%)
Frame = +3
Query: 621 PKAPPP*KXXKKSTPNXXXAXPXGXKKTPXXPPXNPPXAXXFPXPAXXGKPXPXSPXGKG 800
P PPP TP P P +PP P PA G P P P G
Sbjct: 143 PSPPPPPTVPAAPTPRPSPPPPAAGTNGTARAP-SPPV----PAPAPAGSPPPPPPPPAG 197
Query: 801 GXXXXPXRXVSXGGXGXPP-QXGLXAKPPR 887
G P P G A PPR
Sbjct: 198 GNFTAPSPAGGMNFTAPAPGTNGTAAPPPR 227
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 32.3 bits (70), Expect = 0.78
Identities = 26/98 (26%), Positives = 28/98 (28%), Gaps = 3/98 (3%)
Frame = +3
Query: 573 PQKGXXPKKGXXXGFXPKAPPP*KXXKKSTPNXXXAXPXGXKKTPXXPPXNPPXAXXFPX 752
P P G G PPP + P + P PP PP A P
Sbjct: 304 PPHPLPPGAGAGAGTGAPPPPPAHPAAPAPPPPAPS-PSAAGAGSGPPPPPPPAAPAAPR 362
Query: 753 PAXXGKPXPXSPXGKGGXXXXPXRXVSXGG---XGXPP 857
P G P P G P GG G PP
Sbjct: 363 PPGPGPGPPPPPGAAGRGGGGPPPPALPGGPRARGPPP 400
>07_01_0479 + 3606663-3607448
Length = 261
Score = 31.9 bits (69), Expect = 1.0
Identities = 23/91 (25%), Positives = 30/91 (32%)
Frame = +3
Query: 630 PPP*KXXKKSTPNXXXAXPXGXKKTPXXPPXNPPXAXXFPXPAXXGKPXPXSPXGKGGXX 809
PPP + P P ++ P PP P P P G P P + G
Sbjct: 169 PPP---GQMPPPMRPPQMPIPFQRPPGVPPAFPGGPPPPPGPFMRGPPPMGPPQVRPGMP 225
Query: 810 XXPXRXVSXGGXGXPPQXGLXAKPPR*XXPG 902
P + G P + G+ PP PG
Sbjct: 226 GGPPPGMRPGMPPPPFRPGMPPPPPGPQQPG 256
>04_04_1126 + 31095651-31096115
Length = 154
Score = 30.7 bits (66), Expect = 2.4
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 702 TPXXPPXNPPXAXXFPXPAXXGKPXPXSPXGK 797
TP PP PP P P P P +P GK
Sbjct: 38 TPKPPPPPPPAPSGVPCPPPPYTPTPATPTGK 69
>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
Length = 429
Score = 30.7 bits (66), Expect = 2.4
Identities = 23/89 (25%), Positives = 29/89 (32%), Gaps = 1/89 (1%)
Frame = +3
Query: 621 PKAPPP*KXXKKSTPNXXXAXPXGXKKTPXXPPXNPPXAXXFPXPAXXGKPXPXSPXGKG 800
P PP + P+ P G TP P +P FP P+ P P G G
Sbjct: 195 PTPPPTPRGFPPPLPSPGAGAPRGGSATPAMIPGHPGAFYPFPPPSL---PGVGPPRGGG 251
Query: 801 GXXXXPXRXVSXGGXGXP-PQXGLXAKPP 884
P P P G+ +PP
Sbjct: 252 AIPGLPAGFPFLLRPPPPLPVPGVICRPP 280
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 30.3 bits (65), Expect = 3.1
Identities = 25/98 (25%), Positives = 30/98 (30%), Gaps = 8/98 (8%)
Frame = +2
Query: 686 PRDXKNPXXPPXKPPXXPXXSPPC-------XXRKTXPXFPLXXGGXXXXXXPXGFXXGV 844
P D P P PP P SPPC T P P P G
Sbjct: 1133 PLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGP 1192
Query: 845 XATP-PXGAXCKTPPLXPTGGPNRXXXVXXPPPXKKXF 955
P P + PP+ P P+ + PP + F
Sbjct: 1193 PPQPAPPPLPIQPPPIPPPPVPSSPSSLGYQPPAPEYF 1230
>06_02_0122 - 12095385-12095713,12096018-12096120
Length = 143
Score = 30.3 bits (65), Expect = 3.1
Identities = 17/60 (28%), Positives = 22/60 (36%)
Frame = -3
Query: 883 GGFAXSPXWGGXPHPPXETXRXGXXXXPPXPKGEXGXGFPXXAGXGXXXAXGGFXGGXXG 704
GG+ +GG P G P G G G+ G G + GG+ GG G
Sbjct: 62 GGYGYGGGYGGEYGRPGYGGGYGGGYGHPGYGGGYGGGYGRGYGGGYGGSGGGYGGGYGG 121
>02_03_0388 +
18429538-18430598,18430971-18431081,18431165-18431237,
18431513-18431695
Length = 475
Score = 25.4 bits (53), Expect(2) = 3.8
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 851 TPPXGAXCKTPPLXPTGGPNRXXXVXXPPP 940
TPP A TPP P P++ PPP
Sbjct: 106 TPPQ-APAPTPPQAPRPAPSKSRAPQAPPP 134
Score = 23.0 bits (47), Expect(2) = 3.8
Identities = 11/34 (32%), Positives = 11/34 (32%)
Frame = +2
Query: 686 PRDXKNPXXPPXKPPXXPXXSPPCXXRKTXPXFP 787
P P PP P SPP T P P
Sbjct: 78 PAPPSPPQASAPSPPHAPAPSPPQAPAMTPPQAP 111
>06_02_0123 + 12104187-12104252,12105455-12105775
Length = 128
Score = 29.9 bits (64), Expect = 4.1
Identities = 18/60 (30%), Positives = 21/60 (35%)
Frame = -3
Query: 883 GGFAXSPXWGGXPHPPXETXRXGXXXXPPXPKGEXGXGFPXXAGXGXXXAXGGFXGGXXG 704
GGF +GG P G P G G G+ G G GG+ GG G
Sbjct: 47 GGFGYGGGYGGGYGRPGYGGGYGGGYGYPRYGGGYGGGYGCGYGGGYGGYGGGYGGGYGG 106
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.5 bits (63), Expect = 5.5
Identities = 23/93 (24%), Positives = 26/93 (27%)
Frame = +2
Query: 662 PQXXGGKXPRDXKNPXXPPXKPPXXPXXSPPCXXRKTXPXFPLXXGGXXXXXXPXGFXXG 841
P G P + PP PP P P K P P P +
Sbjct: 229 PPRTPGDTPAVVEPKPQPPPPPPRAPVKMPRVLEPKPSPPPP-----SPLPPPPEDYWSP 283
Query: 842 VXATPPXGAXCKTPPLXPTGGPNRXXXVXXPPP 940
TPP K PP P P + PP
Sbjct: 284 TAVTPPEPTKPKPPPPSPPPPPQQPSQRYWTPP 316
>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 5.5
Identities = 30/125 (24%), Positives = 34/125 (27%), Gaps = 3/125 (2%)
Frame = +3
Query: 573 PQKGXXPKKGXXXGFXPKAPPP*KXXKKSTPNXXXAXPXGXKKTPXXPPXNPPXAXXFPX 752
P + P G APPP +S+ K P PP P A
Sbjct: 646 PNRLVPPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANRTNG 705
Query: 753 PAXXGKPXPXSPXGKGGXXXXPXRXVSXGGXGXPPQXGLXA---KPPR*XXPGALTGXXX 923
P P P P P S PP A PP P +TG
Sbjct: 706 PGVPSAPPPPPPPPPANRSNGP----SAPAPPLPPPLPAAANKRNPPAPPPPPLMTGKKA 761
Query: 924 FXXPP 938
PP
Sbjct: 762 PAPPP 766
>12_01_0526 -
4171313-4171417,4171514-4171597,4171688-4171758,
4171814-4171891,4174482-4174569,4174659-4174850,
4174939-4175802
Length = 493
Score = 29.1 bits (62), Expect = 7.2
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +3
Query: 684 PXGXKKTPXXPPXNPPXAXXFPXPAXXGKPXPXSPXGKGG 803
P + TP PP PP P A P P SP +GG
Sbjct: 151 PPPQESTPPPPPPPPPA----PVAAAVSAPAPPSPASQGG 186
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 7.2
Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Frame = +3
Query: 546 PXKKXXTKXPQKGXXPKKGXXXGFXPKAPPP*KXXKKSTPNXXXAXPXGXK-KTPXXPPX 722
P K P P P++ PP + TP + P + TP P
Sbjct: 520 PKSPERKKAPPPQAEPPTEYSPPATPESSPPPEGKSPPTPTASHSPPPVPEGHTPSPPKS 579
Query: 723 NPPXAXXFPXPAXXGKPXP 779
PP P P P P
Sbjct: 580 GPPAGESPPTPESKASPPP 598
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 28.7 bits (61), Expect = 9.6
Identities = 29/102 (28%), Positives = 30/102 (29%)
Frame = +3
Query: 621 PKAPPP*KXXKKSTPNXXXAXPXGXKKTPXXPPXNPPXAXXFPXPAXXGKPXPXSPXGKG 800
P PPP S P A P PP P P G P P P
Sbjct: 204 PPPPPPPPLPASSEPVDPSAASLPPLPPPPPPPPKPANIAGAP-----GLPLPPPPPPPP 258
Query: 801 GXXXXPXRXVSXGGXGXPPQXGLXAKPPR*XXPGALTGXXXF 926
G P R + G PP PPR P L G F
Sbjct: 259 G---PPPREIVPGQTLLPP-----PPPPRPLQPSPLAGTNEF 292
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 28.7 bits (61), Expect = 9.6
Identities = 22/80 (27%), Positives = 22/80 (27%), Gaps = 1/80 (1%)
Frame = +3
Query: 552 KKXXTKXPQKGXXPKKGXXXGFXPKAPPP*KXXKKSTPNXXXAXPX-GXKKTPXXPPXNP 728
KK K G P P P P K P P G K P P P
Sbjct: 146 KKCGDKCFHHGPKPGPKPKPKPSPPKPKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGP 205
Query: 729 PXAXXFPXPAXXGKPXPXSP 788
P P KP P P
Sbjct: 206 KPKPKPPKPGPKPKPGPPQP 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,906,232
Number of Sequences: 37544
Number of extensions: 347376
Number of successful extensions: 1851
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3654850728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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