Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_A16
(1264 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.036
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.11
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 3.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 5.5
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 34.3 bits (75), Expect = 0.036
Identities = 28/85 (32%), Positives = 28/85 (32%), Gaps = 1/85 (1%)
Frame = +1
Query: 784 GXGXGGXXXGPPPPGXXPKXPXPXXGGXXPXXGXKXXXGX-PXXTPPGPXGXPPXPXXGX 960
G G G G PPPG GG G G P GP G P G
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP--GG 246
Query: 961 PGPPXXPXGGGGGXFPXPPXGGGXP 1035
G GGG G F P G G P
Sbjct: 247 FGGGLGGFGGGPGGFGGGPGGHGGP 271
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/39 (46%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Frame = +1
Query: 394 GGXGPPPXXGG-GKKXXFG----XXGGXXGFLGPPXGXE 495
G GPPP GG G FG GG GF G P G E
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFE 234
Score = 26.6 bits (56), Expect = 7.2
Identities = 26/84 (30%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Frame = -3
Query: 947 GXGGXPXGPGGVXXGXPXXXLXPXXGXXPPXXGXGXXGXXPGG--GGPXXKPPXPXPLXG 774
G GG P GPGG G G G G PGG GGP P G
Sbjct: 196 GSGGPPPGPGG------FGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGG 249
Query: 773 XGPXXXPXPXXFXXGXPPXXGEXG 702
P F G P G G
Sbjct: 250 GLGGFGGGPGGF-GGGPGGHGGPG 272
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.11
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +1
Query: 904 PXXTPPGPXGXPPXPXXGXPGPPXXPXGGGGGXFPXPP 1017
P P PP P G P PP P G G P PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 31.9 bits (69), Expect = 0.19
Identities = 20/67 (29%), Positives = 20/67 (29%)
Frame = +1
Query: 814 PPPPGXXPKXPXPXXGGXXPXXGXKXXXGXPXXTPPGPXGXPPXPXXGXPGPPXXPXGGG 993
PPPP P P P G P PP P P P PP GG
Sbjct: 734 PPPPAVIVPTPAP---APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGS 790
Query: 994 GGXFPXP 1014
P P
Sbjct: 791 RYYAPAP 797
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Frame = +1
Query: 913 TP-PGPXGXPPXPXX--GXPGPPXXPXGGGGGXFPXPP 1017
TP P P PP G P PP P G G P PP
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = -2
Query: 459 PPXXPKXXFFXPPXXGGGPXPPXXFXXXGXPXPPPXGG 346
PP P P P PP G P PPP G
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769
Score = 27.1 bits (57), Expect = 5.5
Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Frame = +1
Query: 916 PPGPXGXPPXPXXGX-PGPPXXPXGGGGGXFPXPP--XGGGXP 1035
PP P P P P PP P GG P PP G G P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -3
Query: 458 PPXXPKXXFXPPPXXGGGPXPPRXFXXXGXXXPPP 354
P P P P GG P PP G PPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 1.0
Identities = 20/70 (28%), Positives = 20/70 (28%)
Frame = +1
Query: 814 PPPPGXXPKXPXPXXGGXXPXXGXKXXXGXPXXTPPGPXGXPPXPXXGXPGPPXXPXGGG 993
P P P P G P K P P P G PP P PP G
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVP--KPSVAAPPV--PAPSGAPPVPKPSVAAPPVPAPSSG 1177
Query: 994 GGXFPXPPXG 1023
P P G
Sbjct: 1178 IPPVPKPAAG 1187
Score = 27.5 bits (58), Expect = 4.1
Identities = 20/67 (29%), Positives = 20/67 (29%)
Frame = +1
Query: 814 PPPPGXXPKXPXPXXGGXXPXXGXKXXXGXPXXTPPGPXGXPPXPXXGXPGPPXXPXGGG 993
PP P P P P K P P P G PP P PP P G
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPV-PKPSVAVPPV--PAPSGAPPVPKPSVAAPP-VPVPSG 1138
Query: 994 GGXFPXP 1014
P P
Sbjct: 1139 APPVPKP 1145
Score = 27.5 bits (58), Expect = 4.1
Identities = 23/90 (25%), Positives = 23/90 (25%)
Frame = +1
Query: 703 PXSPXXGGXPXXKXXGXGXXXGPXPXRGXGXGGXXXGPPPPGXXPKXPXPXXGGXXPXXG 882
P P G P P P G P P P P P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPS-----SGIPPVPKPAAGVPPVPPPSEAPPVP--- 1201
Query: 883 XKXXXGXPXXTPPGPXGXPPXPXXGXPGPP 972
K G P PP P P G P P
Sbjct: 1202 -KPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -1
Query: 616 PXXQPPXPXGGXGXXXXXKXPPPPPXPXKKK 524
P PP P G + PPPPP KK
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = -2
Query: 426 PPXXGGGPXPPXXFXXXGXPXPPPXGG 346
PP P PP F P PPP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +1
Query: 961 PGPPXXPXGGGGGXFPXPPXGGGXP 1035
P PP P G P PP G P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAP 361
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,808
Number of Sequences: 5004
Number of extensions: 44139
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 685576410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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