Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_A14
         (1177 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    73   8e-14
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    42   1e-04
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    42   1e-04
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    31   0.41 
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    29   1.3  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   5.0  

>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 72.9 bits (171), Expect = 8e-14
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
 Frame = +1

Query: 103 MRIETCYFLFIQGFILDTESNLSGMT-AKFSDSVVQNATQRLKRRRIPXKTKWTKAYRKT 279
           MR+ TCYF    G +      +     +K          +  K +R P K  WTKAYRK 
Sbjct: 1   MRVHTCYFC--SGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKA 58

Query: 280 AGKELSIDPSFEFEK-RRNVPLKYNRELWTKTIEAMKKVEEIRQRRSNNYIMQRLRQGRE 456
            GKE+  D +      RRNVP++Y+R +   T+ AMK+V ++  +R   +  +RL   R 
Sbjct: 59  HGKEMVYDTALAVTAARRNVPVRYDRNVIATTLNAMKRVSQVHAKRERLFYKKRLAGKRA 118

Query: 457 VEWQRDVREVQRDISLIKSPAAGLKQRQALEATEMEVEPETIE 585
            E Q   + + +++     P   ++  +  E   +  E  T+E
Sbjct: 119 QELQEAQKLIAQNVPQFTEPEGEVETAEVQEPQIVSDEEYTME 161



 Score = 68.9 bits (161), Expect = 1e-12
 Identities = 27/34 (79%), Positives = 29/34 (85%)
 Frame = +3

Query: 144 YPGHGIQFVRNDCKIFRFCRSKCHAAFKKKKNPR 245
           YPGHGI FVRND K+FRFCRSKCH  FK K+NPR
Sbjct: 14  YPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPR 47


>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 18/34 (52%), Positives = 22/34 (64%)
 Frame = +3

Query: 144 YPGHGIQFVRNDCKIFRFCRSKCHAAFKKKKNPR 245
           YPG G  FVR D K+FRF   K  + F ++KNPR
Sbjct: 14  YPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPR 47


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 18/34 (52%), Positives = 22/34 (64%)
 Frame = +3

Query: 144 YPGHGIQFVRNDCKIFRFCRSKCHAAFKKKKNPR 245
           YPG G  FVR D K+FRF   K  + F ++KNPR
Sbjct: 14  YPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPR 47


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +1

Query: 226 KRRRIPXKTKWTKAYRKTAGKELSIDPSF--EFEKRRNVPLKYNRELWTKTIEAMKKVEE 399
           KRR+I    KW +   +  GK+L  +     +  +R+    K + + W +  +  KK   
Sbjct: 140 KRRKIEESDKWHRVLLQAEGKKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEKKAML 199

Query: 400 IRQRRSNNYIMQR 438
           +RQ+R    + +R
Sbjct: 200 MRQQRREENLKKR 212


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 25/117 (21%), Positives = 55/117 (47%)
 Frame = +1

Query: 238 IPXKTKWTKAYRKTAGKELSIDPSFEFEKRRNVPLKYNRELWTKTIEAMKKVEEIRQRRS 417
           +P K K +K     A ++  +  SF   +++  P K  +E   + I+A  K     +   
Sbjct: 64  VPEKQKTSKLALLAAERK-KLHSSFPSTQQQ--PPKTEKEKEKEPIQAKHK-----KNVE 115

Query: 418 NNYIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGLKQRQALEATEMEVEPETIEV 588
           N++++QR R+ R  E +   +    +I L         Q+Q +E+ +++  P+ +++
Sbjct: 116 NDFLLQRFRKVRIAEKKDSEQPSSHEIHLTDDDDKTTLQKQMVESDQLKKNPQEVKL 172


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 873  SPNKKKNDVLLLRIYNFKNMLNHQNSDPANIYIQTNESLS 754
            +P  K  ++  LR+YN  +     NSD  +  +++NES++
Sbjct: 1158 APIVKSFELFALRLYNALSKNYEMNSDIKDCIVESNESMN 1197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,655,473
Number of Sequences: 5004
Number of extensions: 68407
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 631521694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)