Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_A13
         (1246 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    32   0.97 
AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical ...    31   2.2  
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    30   3.0  

>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 31.9 bits (69), Expect = 0.97
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 594 YKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIA 716
           Y+  R+F +E    ALL +   +P+TC   +  E W FL A
Sbjct: 71  YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCA 111


>AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical
           protein M151.1 protein.
          Length = 402

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
 Frame = -3

Query: 887 NPXNQWLLPVAISRV-LPGWTQDDSYRIRRSGRAERGVRAHSPAWSERPTPN*DTYSVSY 711
           NP  +   P A+  V   G++    +R RR     +    H  AW+ R  P    ++ + 
Sbjct: 59  NPLGEQRTPQAVRSVPKDGYSL---FRYRRMVFGAKDQLKHDKAWNNRSLPQKSRWNQAS 115

Query: 710 EKAPRFPKGERRTGIR*AAGSEQESARGSFQGETPGIF 597
            K  ++ K E + G     G+E+       +G+T   F
Sbjct: 116 VKLAQYQKAEEKMGFIKVFGTEEFQNYSKRRGQTRNSF 153


>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
            protein 4 protein.
          Length = 2325

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = -2

Query: 213  FIAAYNGYK*SNSITNF----TNKAFFSLHSSCGLSKLINVSYHVWIQLTLXKGRSAAAX 46
            +I  Y GY+      N     T++ +F  H   GL++ +   + VW + +  KG   +A 
Sbjct: 1807 YIVNYKGYRMQEEFKNEDQQRTSRNYFDTH---GLAEGVTYFFSVWAETSAGKGEQRSAN 1863

Query: 45   TTMG 34
             T+G
Sbjct: 1864 VTIG 1867


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,943,086
Number of Sequences: 27780
Number of extensions: 480573
Number of successful extensions: 1214
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3453805598
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)