Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_A11
         (1165 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR542116-1|CAG46913.1|  185|Homo sapiens RABAC1 protein.               33   2.6  
CR457214-1|CAG33495.1|  185|Homo sapiens RABAC1 protein.               33   2.6  
BT019964-1|AAV38767.1|  185|Homo sapiens Rab acceptor 1 (prenyla...    33   2.6  
BC008950-1|AAH08950.1|  185|Homo sapiens RABAC1 protein protein.       33   2.6  
AJ133534-1|CAB43107.1|  185|Homo sapiens prenylated Rab acceptor...    33   2.6  
AF112996-1|AAP97229.1|  184|Homo sapiens prenylated RAB acceptor...    33   2.6  
AF112202-1|AAF17190.1|  185|Homo sapiens prenylated rab acceptor...    33   2.6  

>CR542116-1|CAG46913.1|  185|Homo sapiens RABAC1 protein.
          Length = 185

 Score = 32.7 bits (71), Expect = 2.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 704 IAKNLHNYVHKYPFFYLSILTYCVANIPIRINRSSLFFLSAY 579
           + +N+  Y   Y F +L ++ YCV   P+ +   ++FF + Y
Sbjct: 67  LVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACY 108


>CR457214-1|CAG33495.1|  185|Homo sapiens RABAC1 protein.
          Length = 185

 Score = 32.7 bits (71), Expect = 2.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 704 IAKNLHNYVHKYPFFYLSILTYCVANIPIRINRSSLFFLSAY 579
           + +N+  Y   Y F +L ++ YCV   P+ +   ++FF + Y
Sbjct: 67  LVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACY 108


>BT019964-1|AAV38767.1|  185|Homo sapiens Rab acceptor 1
           (prenylated) protein.
          Length = 185

 Score = 32.7 bits (71), Expect = 2.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 704 IAKNLHNYVHKYPFFYLSILTYCVANIPIRINRSSLFFLSAY 579
           + +N+  Y   Y F +L ++ YCV   P+ +   ++FF + Y
Sbjct: 67  LVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACY 108


>BC008950-1|AAH08950.1|  185|Homo sapiens RABAC1 protein protein.
          Length = 185

 Score = 32.7 bits (71), Expect = 2.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 704 IAKNLHNYVHKYPFFYLSILTYCVANIPIRINRSSLFFLSAY 579
           + +N+  Y   Y F +L ++ YCV   P+ +   ++FF + Y
Sbjct: 67  LVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACY 108


>AJ133534-1|CAB43107.1|  185|Homo sapiens prenylated Rab acceptor 1
           (PRA1) protein.
          Length = 185

 Score = 32.7 bits (71), Expect = 2.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 704 IAKNLHNYVHKYPFFYLSILTYCVANIPIRINRSSLFFLSAY 579
           + +N+  Y   Y F +L ++ YCV   P+ +   ++FF + Y
Sbjct: 67  LVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACY 108


>AF112996-1|AAP97229.1|  184|Homo sapiens prenylated RAB acceptor 1
           protein.
          Length = 184

 Score = 32.7 bits (71), Expect = 2.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 704 IAKNLHNYVHKYPFFYLSILTYCVANIPIRINRSSLFFLSAY 579
           + +N+  Y   Y F +L ++ YCV   P+ +   ++FF + Y
Sbjct: 66  LVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACY 107


>AF112202-1|AAF17190.1|  185|Homo sapiens prenylated rab acceptor 1
           protein.
          Length = 185

 Score = 32.7 bits (71), Expect = 2.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 704 IAKNLHNYVHKYPFFYLSILTYCVANIPIRINRSSLFFLSAY 579
           + +N+  Y   Y F +L ++ YCV   P+ +   ++FF + Y
Sbjct: 67  LVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGACY 108


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,068,849
Number of Sequences: 237096
Number of extensions: 2203625
Number of successful extensions: 6370
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6370
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16238637850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)