Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_A11
         (1165 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical...    31   1.2  
Z81088-7|CAB03129.2|  337|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1 (de...    29   8.3  
U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1 (de...    29   8.3  

>AF000261-10|AAB52930.1|  639|Caenorhabditis elegans Hypothetical
           protein F19B10.10 protein.
          Length = 639

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -3

Query: 731 NYRIFNRKDIAKNLHNYVHKYPFFYLSILTYCVANIPIRINRSSLFFLSAYYK 573
           N+R F  KDI+ +   +++K   F LSI    +   P+  NR SLF L+ + K
Sbjct: 101 NHRFFIHKDISSD-KKFLYKNDIF-LSIQDNLIVRKPVLRNRVSLFMLAYFLK 151


>Z81088-7|CAB03129.2|  337|Caenorhabditis elegans Hypothetical
           protein F53F1.7 protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 24/103 (23%), Positives = 43/103 (41%)
 Frame = -2

Query: 381 LYVFIIVCVKANNMILHISYSLLYKRWT*SRKRTRLQKVFSIKKTYKIKRNKYIIDRVYI 202
           L +  ++ +  NN++ +I+Y    K+   SR RT +     +    K K+   +     I
Sbjct: 192 LEILFVLAIVVNNLVTYITYRFKLKKKVLSR-RTSVAGSKYLDSREKQKKESSLDKMTAI 250

Query: 201 *CDTLMFTFAFLCDLIMF*FKTTPYTYRLYTYKPIVFIYSNYS 73
            C   +  FAF+   +    +T       + Y  +  IYS YS
Sbjct: 251 VCSLELIYFAFVVYSLQI-NQTMNKRVFYFLYNILCVIYSTYS 292


>U52002-9|AAB37727.2|  839|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform a protein.
          Length = 839

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 749 LITLILNYRIFNRKDIAKN-LHNYVHKYPFFYLSILTYCVANIPIRINRSS 600
           L+  I+     N+  + ++ L +Y H  PF+Y + +  C+    ++++ SS
Sbjct: 399 LVEEIVKEPFLNKSQVWRSKLESYFHTVPFYYNTQIRVCLDKFDVKVDYSS 449


>U52002-8|AAU05577.1|  842|Caenorhabditis elegans Human dice1
           (deleted in cancer)homolog protein 1, isoform b protein.
          Length = 842

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 749 LITLILNYRIFNRKDIAKN-LHNYVHKYPFFYLSILTYCVANIPIRINRSS 600
           L+  I+     N+  + ++ L +Y H  PF+Y + +  C+    ++++ SS
Sbjct: 402 LVEEIVKEPFLNKSQVWRSKLESYFHTVPFYYNTQIRVCLDKFDVKVDYSS 452


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,233,362
Number of Sequences: 27780
Number of extensions: 421058
Number of successful extensions: 897
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3172075232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)