Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_A10
         (1212 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    67   4e-12
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   5.2  
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   5.2  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    27   6.9  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   9.2  

>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 336

 Score = 67.3 bits (157), Expect = 4e-12
 Identities = 57/252 (22%), Positives = 102/252 (40%), Gaps = 11/252 (4%)
 Frame = +2

Query: 338  NVNNWHWTEKNAGPWSKDRLKELFSDLKIAQNGIVCSITEVEKVDGEASANNRKGKLIFF 517
            N NNWHWT K+   WS +   +    ++ ++      IT+V   +G+   + RK K+I  
Sbjct: 7    NPNNWHWTSKDCRVWSHEYFNKELPKIQASEGPTSARITQVNSCEGDVDVSMRKRKVITI 66

Query: 518  YEWDIKLKWEGVLAGGSEKIKGEIHIPNLSEENDVSEVDMTVTIKSNGDEAQRVKAFMHH 697
            ++  I+++++G    G E   G I  P LS +   S+    + I S   E + +K  +  
Sbjct: 67   FDLKIQMEFKGETKDGVEAT-GSITCPELSYDLGYSDYVFDIDIYSASKEKEPIKELVRE 125

Query: 698  VGREEIRKQLQEYIRSLKEEFSKGLILPKKGE-----------SSVKPDNVSTITSGFNK 844
                +IR+    + + L +     + L  +             SS K +N S+ TS    
Sbjct: 126  KIIPQIRQLFSGFSQVLLQTHGDDVYLSTEEHNGNAARGLPVHSSFKQNN-SSQTSSNKG 184

Query: 845  KINMNPIISPQTNKVGCKLDTKTIELSEKFQCRGQEFYDAMTXIXMVTAFTQGHVKLXPX 1024
               +        ++V   ++T  I  +  F     E Y        V A+++   +L   
Sbjct: 185  TTTVAAGSGSDGSRVSAVVNTADISENYTFDAPANELYATFLDPARVAAWSRAPPQLDVR 244

Query: 1025 KXGKXALXGGNV 1060
              G  +L  GNV
Sbjct: 245  PQGAFSLFHGNV 256


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 838  KSTCDC*YIVRFNGRFTFLWQNEAF*ELFFKASNILLEL--FSDLF 707
            K TCDC Y + F G  TF +Q   F  ++    + LL+L  F +LF
Sbjct: 1124 KPTCDCVYDISF-GSLTFYFQKSYFNAIY----DFLLKLKRFQELF 1164


>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = +2

Query: 380 WSKDRLKELFSDLKIAQNGIV------CSITEVEKVDGEASANNRKGKLIFFYEWDIKLK 541
           +S D  K L  +  IA N  +      CSI  VEK+    +  +     I F+ WD+  +
Sbjct: 260 YSSDFKKRLLKNELIAHNDPMEIEMRGCSIWAVEKILQNINRKDVNAITIDFFLWDLAKE 319

Query: 542 WE 547
           W+
Sbjct: 320 WQ 321


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = +2

Query: 782 KKGESSVKPDNVSTITSGFNKKI--NMNPIISPQTNKVGCKLDTKTIE 919
           +K + S+KPD  +  +S  NKK   N+N   SP+T    CK++ +T++
Sbjct: 498 RKKQKSLKPDTENQESSVKNKKAKSNVNLQYSPKTPI--CKINDETLK 543


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +2

Query: 575 IKGEIHIPNLSEENDVSEVDMTVTIKSNGDEAQRVKAFMHHVGREEIRKQLQEYIRSLKE 754
           ++  +   +LS++ + S VDM +            K  +      ++RK+ + Y +SL+ 
Sbjct: 326 VRSSLSSSSLSKDTEPSTVDMHIAFTGLN------KPTIERERNLKLRKKSRFYKKSLRS 379

Query: 755 EFSKGLILP 781
            FS+GL  P
Sbjct: 380 RFSRGLHRP 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,276,269
Number of Sequences: 5004
Number of extensions: 87529
Number of successful extensions: 264
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 655427878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)