Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_A09
         (1163 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   5.0  
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom...    27   6.6  
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p...    27   6.6  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 578  NCYQVELKFYLAFGISRTVFVYNYKDKLHNIL 483
            N Y+  LK Y+ +G+S +V +Y   +K HN++
Sbjct: 1702 NLYKTILKHYVHYGLSTSVPLYTSLEK-HNLI 1732


>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 423 CNNSCSLCLANK*FPSFFPSVIVPTTYDRYV 331
           C  +C L + +K     FP V VPT ++ YV
Sbjct: 17  CGKTCLLIVFSK---GTFPEVYVPTVFENYV 44


>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 423 CNNSCSLCLANK*FPSFFPSVIVPTTYDRYV 331
           C  +C L + +K     FP V VPT ++ YV
Sbjct: 17  CGKTCLLIVFSK---GTFPEVYVPTVFENYV 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,949,143
Number of Sequences: 5004
Number of extensions: 77861
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 623552966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)