Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_A09
         (1163 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0402 - 18627565-18628137,18628343-18628479,18628513-186286...    30   4.0  
01_06_1841 + 40267902-40268485,40269290-40270421                       29   7.0  
10_08_0444 + 17971724-17971797,17972119-17972176,17972613-179727...    29   9.3  
04_01_0392 + 5149981-5150014,5150124-5150188,5150572-5150868           29   9.3  
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239...    29   9.3  

>02_03_0402 -
           18627565-18628137,18628343-18628479,18628513-18628603,
           18629734-18629817
          Length = 294

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 300 LNIYFLKRIKRHTCRMLLVL*QKERKKEIIYSPSIVNMSYYIS*KQRVWFV 452
           +NI  L +IK+H       L  KE+ +E+  SP I      ++ +++VW V
Sbjct: 238 VNIIELSQIKQHIYAYYKGLFGKEKSREVHLSPEIWQDKLRLTGEEKVWMV 288


>01_06_1841 + 40267902-40268485,40269290-40270421
          Length = 571

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 322 RFKKYMFNHTITDIQIHIDKYQVVGRRNRWYLP 224
           + ++ + +  I   Q H+DKY    R++ WY P
Sbjct: 523 KVRRAVCDKVILAYQAHLDKYMKAKRKHEWYTP 555


>10_08_0444 +
           17971724-17971797,17972119-17972176,17972613-17972708,
           17972974-17973000,17973019-17973075,17973604-17973687,
           17974304-17974384,17974928-17975071,17975218-17975309,
           17975998-17976079,17976818-17977000,17977360-17977438,
           17977555-17977613,17978162-17978290,17979188-17979367,
           17980312-17980446,17980528-17980602,17980890-17980947,
           17981035-17981282,17981594-17981733,17981961-17982132,
           17982797-17982887,17983099-17983221,17984951-17985032,
           17985715-17985835,17985886-17985915,17986427-17986549
          Length = 940

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 13/51 (25%), Positives = 29/51 (56%)
 Frame = +2

Query: 200 RAGVLCSRG*VPPISTPYDLIFIYVYLNIGNCVIKHIFLKTNQTTYLSYVV 352
           R G++     V P+  PY++IF  ++L+  + V  H F++  +  + +Y++
Sbjct: 330 RPGLVPHISEVNPVKYPYEVIFRSIFLSRHSLVKNHCFIRFFKMMWKNYLL 380


>04_01_0392 + 5149981-5150014,5150124-5150188,5150572-5150868
          Length = 131

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
 Frame = +2

Query: 329 TTYLSYVVGTMTEGKKEGNHLFAK----HSEHELLHKLKAACMVCHYLTCKF*CSARYYV 496
           T+ +++V G M E   +G+ +F K     ++ E +  LK     CHY       + +  V
Sbjct: 10  TSGVNHVAGNMFESVPKGDAIFLKSMLLRNDEECIKILKN----CHYALSD---NGKVIV 62

Query: 497 I-YLYNYKQKPSLKYQTPSKISIQPDNNSRSALIMCKQKYSLISKGMKF 640
           +  +     KP  + Q P ++ +   NN R   I  +Q+Y+ ++    F
Sbjct: 63  VDIVLPETPKPVPEAQNPLRMDVMMLNNLRGGKIRTEQEYAKLAMDSGF 111


>02_01_0335 +
           2386902-2386906,2386976-2387282,2387664-2387777,
           2390252-2390320,2390416-2390715,2390829-2390930,
           2391085-2391279,2391377-2391664,2391942-2392128,
           2393168-2393272,2393778-2393824,2393982-2394074
          Length = 603

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 515 YNYKDKLHNILHCTKTCMSNNDKPYTLLLTYVITHVHYAW 396
           Y + + + ++  C  T ++ N KP T    +V+TH+H  W
Sbjct: 551 YQHTNAICDVWSCCLTSLALNAKPETPE-GFVVTHIHKTW 589


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,944,983
Number of Sequences: 37544
Number of extensions: 403402
Number of successful extensions: 764
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3549867584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)