Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP26_F_A09
         (1163 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical pr...    31   1.6  
Z93374-1|CAB07554.1|  346|Caenorhabditis elegans Hypothetical pr...    31   2.1  
U55376-1|AAA98003.1|  434|Caenorhabditis elegans Hypothetical pr...    30   2.7  

>U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical
           protein C50E3.9 protein.
          Length = 330

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -1

Query: 653 FFELKISFL*RLNYIFVCT*SMRFWNCYQVELKFYLAFGISRTVFVYNYKDKLHNIL 483
           FF + ISF+  LNY + CT    F N +    KF+  FG+    F+++    + +IL
Sbjct: 188 FFSIAISFVITLNYFYYCT----FRNWHSRNFKFH-KFGVLIFTFLFSIICAMSSIL 239


>Z93374-1|CAB07554.1|  346|Caenorhabditis elegans Hypothetical
           protein C06C6.2 protein.
          Length = 346

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 584 FWNCYQVELKFYLAFGISRTVFVYN-YKDKLHNILHCTKTCMSNN 453
           F +  ++ + FYLA     T+F+   Y++ + + L C K C S N
Sbjct: 278 FGHLQELTISFYLATDALPTIFIIKPYREFIFSTLRCLKLCKSAN 322


>U55376-1|AAA98003.1|  434|Caenorhabditis elegans Hypothetical
           protein F16H11.3 protein.
          Length = 434

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = -1

Query: 584 FWNCYQVELKFYLAFGISRTVFVYNYKDKLHNILHCTKTCMSNNDKPYTLLLTYVITHVH 405
           F NCY      +  F ++ T+F                  MS ND+ YTLL ++++ ++ 
Sbjct: 254 FTNCYGQLFNVWFCFAVTLTIFPVMMTVTTRGDSGFLNKIMSENDEIYTLLTSFLVFNLF 313

Query: 404 YA 399
            A
Sbjct: 314 AA 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,739,967
Number of Sequences: 27780
Number of extensions: 435351
Number of successful extensions: 1011
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3172075232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)