Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP26_F_A08
(1223 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 170 2e-42
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 167 2e-41
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 70 3e-12
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 30 4.3
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 5.6
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 5.6
04_03_0353 - 14785648-14787213 29 7.4
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 170 bits (414), Expect = 2e-42
Identities = 83/169 (49%), Positives = 125/169 (73%), Gaps = 2/169 (1%)
Frame = +3
Query: 129 ISQALVELET-NSDLKAQLRXLYITKAKXIELH-NKXSIIIYVPMPKLKAFQKXQIRLVR 302
++QA +LE N +LK++L+ LYI A +++ N+ +++I+VP KAF+K +RLVR
Sbjct: 23 VAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVPYRLRKAFKKIHVRLVR 82
Query: 303 ELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 482
ELEKKFSGK VV V R+I+ P + V +RPR+RTLT+V+D ILED+V+PAEIVG
Sbjct: 83 ELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILEDVVYPAEIVG 138
Query: 483 KRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 629
KRIR +LDG+++IK+ LD ++ E+K++TF +VY++L G++V FE+P
Sbjct: 139 KRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYP 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 167 bits (406), Expect = 2e-41
Identities = 84/167 (50%), Positives = 119/167 (71%), Gaps = 2/167 (1%)
Frame = +3
Query: 135 QALVELET-NSDLKAQLRXLYITKAKXIELH-NKXSIIIYVPMPKLKAFQKXQIRLVREL 308
QA +LE N +LK+ L+ LYI A ++L N+ ++IIYVP KA++K +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 309 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 488
EKKFSGK VV V R+I+ P + V RPR+RTLT+V+D ILED+V+PAEIVGKR
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKR 153
Query: 489 IRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 629
+R LDG +++K+ LD ++ E+K+DTF SVY++L G++V F++P
Sbjct: 154 VRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 70.1 bits (164), Expect = 3e-12
Identities = 38/82 (46%), Positives = 55/82 (67%)
Frame = +3
Query: 237 IIIYVPMPKLKAFQKXQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 416
++I+V KAF+K +RLV+ELEKKFSGK VVF R+I+ +P +K + PR+
Sbjct: 46 VVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-RPLNKGSAVH---HPRT 101
Query: 417 RTLTSVYDAILEDLVFPAEIVG 482
RTL +V+D ILED+V ++G
Sbjct: 102 RTLITVHDGILEDVVSQLRLLG 123
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 459 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 566
+FPA I G + KLD ++L K H D+ + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 408 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 524
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 5.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 403 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 287
F L A+ L L L +L T CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>04_03_0353 - 14785648-14787213
Length = 521
Score = 29.1 bits (62), Expect = 7.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 71 LRPXLIKASGAEADSFDPSYLAGAGRTRNQLRPQSPTSGALHYKS 205
LRP L+K G A + P + A A R R+ L P + L +++
Sbjct: 369 LRPDLVKGDGGAAPALPPEF-AAATRERSMLTTWCPQAEVLEHEA 412
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,954,632
Number of Sequences: 37544
Number of extensions: 370934
Number of successful extensions: 866
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3759607596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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